MatteoLacki / timspyLinks
☆20Updated 4 years ago
Alternatives and similar repositories for timspy
Users that are interested in timspy are comparing it to the libraries listed below
Sorting:
- ☆39Updated 6 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 3 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- Streamlining Mass Spectrometry Data Visualization with Pandas☆20Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 6 months ago
- ☆26Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 6 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated 2 weeks ago
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- ☆28Updated 3 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 3 weeks ago
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated 3 months ago
- Instrument Application Programming Interface☆50Updated 7 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 weeks ago
- Python package for investigating the structural context of PTMs☆28Updated 8 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆21Updated last month
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 3 weeks ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆48Updated 2 weeks ago
- ☆20Updated 7 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- modular & open DIA search☆75Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated 2 weeks ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 3 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated 3 weeks ago
- MS/MS prediction for peptides☆24Updated 4 years ago