Alternatives and similar repositories for prolfqua

Users that are interested in prolfqua are comparing it to the libraries listed below

• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆19Updated this week
• Vitek-Lab / MSstats
  R package - MSstats
  ☆90Updated last week
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 9 months ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 8 months ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆22Updated 2 years ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆26Updated last week
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆40Updated 2 weeks ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆29Updated last month
• tidymass / tidymass
  tidymass
  ☆60Updated 2 weeks ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 6 months ago
• mathiaskalxdorf / IceR
  Quantitative proteomics workflow
  ☆15Updated 3 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆38Updated last month
• jpquast / protti
  Picotti lab data analysis package.
  ☆66Updated 2 weeks ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated last month
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆13Updated last month
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 5 months ago
• bzhanglab / PepQuery
  PepQuery: a targeted peptide search engine
  ☆14Updated last year
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆38Updated last year
• pnnl / leapR
  ☆18Updated this week
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆33Updated 3 years ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• MASHUOA / HiTMaP
  An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics
  ☆19Updated 4 months ago
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆47Updated 6 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆68Updated last year
• pmartR / pmartR
  The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…
  ☆48Updated this week
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆39Updated last year
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago