PRIDE-Archive / pridepy
Python client for PRIDE Archive Rest API.
☆17Updated last month
Related projects ⓘ
Alternatives and complementary repositories for pridepy
- A Python interface to proteomics data repositories☆30Updated 6 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated last week
- ☆54Updated 6 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated 4 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆19Updated last week
- Python package for investigating the structural context of PTMs☆27Updated 10 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆45Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆18Updated 11 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆33Updated this week
- MS/MS prediction for peptides☆22Updated 3 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆22Updated 5 months ago
- ☆32Updated last month
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆22Updated last year
- ☆24Updated 3 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆42Updated 2 weeks ago
- ☆13Updated 8 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆25Updated this week
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated 3 months ago
- Python framework for Deep Learning in Proteomics☆23Updated 3 weeks ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆16Updated last month
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆56Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆38Updated this week
- Differential Expression Analysis tool box R lang package for omics data☆40Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆38Updated this week
- A library for QC report based on MultiQC framework☆14Updated last week
- A label free quantification tool.☆16Updated 5 months ago
- Analysis of co-fractionation MS datasets☆10Updated 2 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆26Updated last week