Alternatives and similar repositories for pridepy

Users that are interested in pridepy are comparing it to the libraries listed below

• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 8 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 4 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆66Updated last year
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆64Updated 2 weeks ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆81Updated 3 weeks ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆54Updated last week
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆39Updated last week
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆57Updated 4 months ago
• InfectionMedicineProteomics / DPKS
  Data Processing Kitchen Sink for proteomics data
  ☆12Updated 6 months ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆20Updated this week
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆98Updated last month
• PayneLab / ProteomicsEducation
  ☆36Updated 3 months ago
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆55Updated 2 weeks ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆120Updated 2 weeks ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated last month
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆22Updated this week
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• smith-chem-wisc / MetaMorpheus
  Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
  ☆103Updated 2 weeks ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated last month
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆23Updated 5 months ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆48Updated 2 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated last month
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆18Updated 4 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆46Updated last week
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated last year
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago