Python client for PRIDE Archive Rest API.
☆40Jun 8, 2026Updated this week
Alternatives and similar repositories for pridepy
Users that are interested in pridepy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python interface to proteomics data repositories☆38Jun 19, 2025Updated 11 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Updated this week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆14Apr 21, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 2 months ago
- Community-curated tutorials and datasets for ML in proteomics☆59Oct 31, 2025Updated 7 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 3 months ago
- Data Processing Kitchen Sink for proteomics data☆13Jun 1, 2026Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last month
- ☆29Jun 2, 2026Updated last week
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 2 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52May 30, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python framework for Deep Learning in Proteomics☆40May 6, 2026Updated last month
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆21Updated this week
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆48Jun 1, 2026Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆52Updated this week
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 11 months ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆23May 6, 2026Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆127Apr 19, 2026Updated last month
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated last month
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jun 2, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆46Mar 14, 2025Updated last year
- Python-based framework for computational immunomics☆15Updated this week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated last month
- A library for QC report based on MultiQC framework☆32May 7, 2026Updated last month
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆32Oct 5, 2022Updated 3 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆55Jun 2, 2026Updated last week
- Course material for CB2030☆16Mar 13, 2026Updated 2 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Jun 1, 2026Updated last week
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- IPAW: a Nextflow workflow for proteogenomics☆29Aug 8, 2024Updated last year
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆27May 3, 2026Updated last month
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated 2 months ago
- Synthetic mzML writer☆14Mar 10, 2025Updated last year
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15May 28, 2026Updated last week
- Prediction of glycopeptide fragment mass spectra by deep learning☆11Feb 20, 2024Updated 2 years ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆110May 26, 2026Updated 2 weeks ago