Python client for PRIDE Archive Rest API.
☆41Jul 29, 2026Updated last week
Alternatives and similar repositories for pridepy
Users that are interested in pridepy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16May 27, 2026Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆82Updated this week
- A library for QC report based on MultiQC framework☆34Jul 27, 2026Updated 2 weeks ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Updated this week
- ☆26Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Python interface to proteomics data repositories☆38Jun 19, 2025Updated last year
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 2 months ago
- SDRF official validator and converts SDRF to pipeline configuration files☆36Updated this week
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 4 months ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆14Jul 1, 2026Updated last month
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Jul 21, 2026Updated 3 weeks ago
- A label free quantification tool.☆20Jan 13, 2026Updated 6 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆50Aug 3, 2026Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 3 weeks ago
- ☆49Mar 14, 2025Updated last year
- ☆35Jul 16, 2026Updated 3 weeks ago
- quantms workflow for DIANN tool including DIA and DDA analysis☆18Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆14Jun 25, 2026Updated last month
- Spectral library searching using approximate nearest neighbor techniques.☆50Feb 11, 2026Updated 5 months ago
- Community-curated tutorials and datasets for ML in proteomics☆61Oct 31, 2025Updated 9 months ago
- Data Processing Kitchen Sink for proteomics data☆15Jun 15, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Jul 18, 2026Updated 3 weeks ago
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆115Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆55Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jul 13, 2026Updated 3 weeks ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Updated this week
- Single cell proteomics data processing☆33Jul 23, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆74May 7, 2024Updated 2 years ago
- Course material for CB2030☆16Jun 23, 2026Updated last month
- Collisional cross-section prediction for modified and multiconformational peptides☆14Jul 16, 2026Updated 3 weeks ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆22Updated this week
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 8 months ago
- Documentation is available here:☆26Jun 10, 2026Updated 2 months ago
- Python framework for Deep Learning in Proteomics☆41Aug 3, 2026Updated last week