PRIDE-Archive / pridepyLinks
Python client for PRIDE Archive Rest API.
☆26Updated this week
Alternatives and similar repositories for pridepy
Users that are interested in pridepy are comparing it to the libraries listed below
Sorting:
- ☆67Updated last year
- A Python interface to proteomics data repositories☆36Updated 6 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 10 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated 2 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆50Updated 2 years ago
- A library for QC report based on MultiQC framework☆24Updated this week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 months ago
- ☆24Updated 2 years ago
- Differential Expression Analysis tool box R lang package for omics data☆47Updated last week
- PDV: an integrative proteomics data viewer☆58Updated 5 months ago
- ☆36Updated 5 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 4 months ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆82Updated 2 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated last week
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆42Updated last week
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 8 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 3 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆47Updated 7 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Updated 2 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Updated last week
- R package for optimized LC-MS spectra processing☆26Updated this week
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- The Interactive Peptide Spectral Annotator☆20Updated 5 years ago