Methods for label-free mass spectrometry proteomics
☆15Mar 23, 2025Updated last year
Alternatives and similar repositories for msImpute
Users that are interested in msImpute are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated last week
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆20Mar 25, 2026Updated last month
- Spatial transcriptomics analyses and decoding in R☆24Oct 23, 2025Updated 6 months ago
- DEqMS is a tool for quantitative proteomic analysis☆25Apr 16, 2025Updated last year
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆14Apr 25, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- GlyCombo, a combinatorial glycan composition assignment tool☆12Apr 10, 2026Updated 3 weeks ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆22Apr 1, 2026Updated last month
- Quantitative features for mass spectrometry data☆29Updated this week
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated last month
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆48Oct 13, 2025Updated 6 months ago
- Omics Data Analysis Tools☆14Nov 26, 2024Updated last year
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Apr 23, 2026Updated last week
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 6 years ago
- Report processing and protein quantification for MS-based proteomics☆55Jun 29, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An r package for proteomics data Analysis, developed from DEP.☆35Mar 21, 2025Updated last year
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated 2 weeks ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆48Sep 29, 2025Updated 7 months ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- R-Shiny GUI integrated with the MSstats package family☆20Apr 25, 2026Updated last week
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 5 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 6 months ago
- R package PCAtest for evaluating the statistical significance of PCA analysis, selecting number of significant PC axes, and testing the c…☆22Oct 18, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- Github repository for nanoSPLITS manuscript data and R scripts☆10Oct 11, 2024Updated last year
- High quality in silico spectral library generation for data-independent acquisition proteomics☆21Mar 31, 2026Updated last month
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 10 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 7 months ago
- A repository of Python tips for common data science tasks, including dataset unit testing and machine learning development for production☆25Apr 10, 2022Updated 4 years ago
- ☆11Aug 10, 2023Updated 2 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Jul 30, 2019Updated 6 years ago
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆52Aug 12, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A cross-platform proteomics data analysis suite☆289Updated this week
- ☆10Mar 24, 2025Updated last year
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Apr 21, 2026Updated last week
- R package for univariate time series cleaning.☆11Sep 30, 2023Updated 2 years ago
- R package - MSstats☆97Updated this week
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 2 years ago
- Phylogenetic profiling with orthology data☆13Apr 21, 2026Updated last week