DavisLaboratory / msImputeLinks
Methods for label-free mass spectrometry proteomics
☆15Updated 3 months ago
Alternatives and similar repositories for msImpute
Users that are interested in msImpute are comparing it to the libraries listed below
Sorting:
- An S3 data object and framework for common quantitative proteomic analyses☆41Updated 2 weeks ago
- R package for analysing proteomics data☆49Updated 2 years ago
- DEP package☆28Updated 2 years ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆20Updated last year
- The repo for LFQ-Analyst☆30Updated 10 months ago
- Quantitative features for mass spectrometry data☆27Updated last month
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated 3 weeks ago
- An r package for proteomics data Analysis, developed from DEP.☆29Updated 3 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 3 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆24Updated last week
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆93Updated 2 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 3 months ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆34Updated 3 months ago
- A tool for large scale omics datasets evaluation☆25Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- R package - MSstats☆83Updated this week
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆47Updated last month
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last week
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆26Updated last year
- ☆27Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 3 months ago
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆16Updated 7 months ago
- An R interface to enrichR☆92Updated 4 months ago
- tidymass☆55Updated last month
- Proteomics Toolset for Integrative Data Analysis☆23Updated 2 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago