DavisLaboratory / msImputeLinks
Methods for label-free mass spectrometry proteomics
☆15Updated 7 months ago
Alternatives and similar repositories for msImpute
Users that are interested in msImpute are comparing it to the libraries listed below
Sorting:
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated 5 months ago
- DEP package☆28Updated 3 years ago
- An R interface to enrichR☆93Updated 9 months ago
- R package for analysing proteomics data☆50Updated 2 years ago
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆98Updated 3 months ago
- Tools for manipulating annotated data matrices☆91Updated 4 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆112Updated this week
- ☆27Updated 4 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆30Updated 11 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Easily install and load packages from the tidyomics ecosystem☆70Updated 3 weeks ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- scDataviz: single cell dataviz and downstream analyses☆64Updated 4 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 7 months ago
- The repo for LFQ-Analyst☆30Updated last year
- Simplify functional enrichment results☆118Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆21Updated 2 years ago
- An r package for proteomics data Analysis, developed from DEP.☆31Updated 7 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 11 months ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 4 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆68Updated 3 weeks ago
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆49Updated 3 months ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- published papers with a lot of data☆74Updated 7 months ago