Vitek-Lab / MSstatsTMTLinks
R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
☆29Updated 3 months ago
Alternatives and similar repositories for MSstatsTMT
Users that are interested in MSstatsTMT are comparing it to the libraries listed below
Sorting:
- Differential Expression Analysis tool box R lang package for omics data☆45Updated 3 weeks ago
- R package - MSstats☆83Updated this week
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆12Updated last week
- Methods for label-free mass spectrometry proteomics☆15Updated 3 months ago
- The repo for LFQ-Analyst☆30Updated 10 months ago
- R-Shiny GUI integrated with the MSstats package family☆15Updated last month
- Quantitative features for mass spectrometry data☆27Updated last month
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆24Updated last week
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 3 months ago
- R package for analysing proteomics data☆49Updated 2 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆27Updated 2 years ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Updated 3 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆49Updated 2 weeks ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆45Updated 5 months ago
- ☆62Updated last year
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆25Updated 3 months ago
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆33Updated 4 years ago
- Documentation is available here:☆17Updated this week
- Robust statistical inference for quantitative LC-MS proteomics☆33Updated 2 years ago
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 4 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆41Updated 2 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- ☆24Updated 2 years ago
- ☆10Updated 2 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 6 years ago
- Picotti lab data analysis package.☆62Updated 2 months ago
- Chemical Similarity Enrichment analysis of metabolomics datasets☆29Updated 11 months ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Updated 3 weeks ago