Alternatives and similar repositories for MSstatsTMT

Users that are interested in MSstatsTMT are comparing it to the libraries listed below

• Vitek-Lab / MSstats
  R package - MSstats
  ☆88Updated 2 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 8 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆47Updated last week
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 6 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆28Updated 2 months ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 4 months ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆18Updated last week
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 9 months ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 8 months ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆59Updated 5 months ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last week
• tidymass / tidymass
  tidymass
  ☆59Updated 3 months ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆25Updated last week
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated 2 weeks ago
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆21Updated 3 weeks ago
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆13Updated last week
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆63Updated 2 weeks ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• arnesmits / DEP
  DEP package
  ☆30Updated 3 years ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆40Updated 10 months ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆30Updated last year
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆26Updated last week
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆33Updated 3 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆64Updated last week
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆50Updated 2 years ago
• xia-lab / MetaboAnalyst_Docker
  Docker for MetaboAnalyst 4.0
  ☆24Updated 5 years ago