Vitek-Lab / MSstatsTMT
R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
☆28Updated 3 months ago
Alternatives and similar repositories for MSstatsTMT:
Users that are interested in MSstatsTMT are comparing it to the libraries listed below
- R package - MSstats☆77Updated last week
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆10Updated 2 months ago
- Differential Expression Analysis tool box R lang package for omics data☆42Updated last week
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- R-Shiny GUI integrated with the MSstats package family☆15Updated 2 weeks ago
- Methods for label-free mass spectrometry proteomics☆14Updated last year
- Quantitative features for mass spectrometry data☆26Updated last week
- R package for analysing proteomics data☆49Updated last year
- The repo for LFQ-Analyst☆29Updated 6 months ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆12Updated 2 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆32Updated 4 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- ☆16Updated this week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆42Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆35Updated this week
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆90Updated last year
- ☆24Updated last year
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated last month
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Updated last year
- ☆56Updated 9 months ago
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆25Updated 6 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆22Updated 4 months ago
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated 3 weeks ago
- Construct database and identify metabolites.☆5Updated 2 years ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆44Updated last week
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆26Updated last year
- tidymass☆54Updated last year
- Report processing and protein quantification for MS-based proteomics☆38Updated last year
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆33Updated 3 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated 2 months ago