python scripts for proteogenomics analysis
☆10Oct 17, 2019Updated 6 years ago
Alternatives and similar repositories for proteogenomics_python
Users that are interested in proteogenomics_python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IPAW: a Nextflow workflow for proteogenomics☆29Aug 8, 2024Updated last year
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 7 months ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 2 weeks ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆23May 6, 2026Updated last month
- Single cell proteomics data processing☆32Apr 6, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…☆12Jul 8, 2021Updated 4 years ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 7 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated 2 months ago
- SDRF official validator and converts SDRF to pipeline configuration files☆34May 19, 2026Updated 3 weeks ago
- ☆119Mar 9, 2016Updated 10 years ago
- DEqMS is a tool for quantitative proteomic analysis☆26Apr 16, 2025Updated last year
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jun 18, 2025Updated 11 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated last month
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Self-exploratory Streamlit app to know more about palmer penguins.☆11Jun 26, 2023Updated 2 years ago
- Creating package to draw proteins from Uniprot API☆35Feb 2, 2026Updated 4 months ago
- Subgraph for Curve.fi☆10Mar 20, 2021Updated 5 years ago
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Test for COVID-19 with the help of OT-2 robots☆12Jun 7, 2020Updated 6 years ago
- ☆12Apr 21, 2016Updated 10 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated last month
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- ☆14Feb 11, 2020Updated 6 years ago
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 6 months ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Apr 11, 2017Updated 9 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- ☆13Mar 19, 2024Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 3 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆18Jun 3, 2020Updated 6 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆78Updated this week