python scripts for proteogenomics analysis
☆10Oct 17, 2019Updated 6 years ago
Alternatives and similar repositories for proteogenomics_python
Users that are interested in proteogenomics_python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IPAW: a Nextflow workflow for proteogenomics☆29Aug 8, 2024Updated last year
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 5 months ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆17Updated this week
- Single cell proteomics data processing☆31Feb 9, 2026Updated 2 months ago
- PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…☆12Jul 8, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 5 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆85Mar 26, 2026Updated 2 weeks ago
- `sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files☆30Mar 30, 2026Updated last week
- ☆119Mar 9, 2016Updated 10 years ago
- DEqMS is a tool for quantitative proteomic analysis☆25Apr 16, 2025Updated 11 months ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆11Jun 18, 2025Updated 9 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆30Jul 28, 2025Updated 8 months ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- Self-exploratory Streamlit app to know more about palmer penguins.☆11Jun 26, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Creating package to draw proteins from Uniprot API☆35Feb 2, 2026Updated 2 months ago
- Subgraph for Curve.fi☆10Mar 20, 2021Updated 5 years ago
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- Test for COVID-19 with the help of OT-2 robots☆12Jun 7, 2020Updated 5 years ago
- ☆12Apr 21, 2016Updated 9 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Dec 17, 2025Updated 3 months ago
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated 10 months ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- Navigation links (and brief descriptions) to my repositories.☆12Nov 25, 2025Updated 4 months ago
- ☆14Feb 11, 2020Updated 6 years ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 6 months ago
- ☆11Apr 11, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆68Updated this week
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- ☆13Mar 19, 2024Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆18Jun 3, 2020Updated 5 years ago
- REEV: Explanation and Evaluation of Variants☆11Mar 30, 2026Updated last week