Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
☆13Apr 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for msqrob2
Users that are interested in msqrob2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated last month
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated last week
- Methods for label-free mass spectrometry proteomics☆15May 13, 2026Updated last week
- DEqMS is a tool for quantitative proteomic analysis☆25Apr 16, 2025Updated last year
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆14Apr 29, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quantitative features for mass spectrometry data☆29May 3, 2026Updated 2 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Converter functions for the MSstats package☆11Apr 29, 2026Updated 3 weeks ago
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 5 months ago
- Omics Data Analysis Tools☆14Nov 26, 2024Updated last year
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15May 8, 2026Updated last week
- ☆14Feb 11, 2020Updated 6 years ago
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 6 months ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆22Apr 1, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single cell proteomics data processing☆32Apr 6, 2026Updated last month
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆21May 6, 2026Updated 2 weeks ago
- R package - MSstats☆97Updated this week
- ☆14Feb 21, 2023Updated 3 years ago
- ☆24Feb 26, 2023Updated 3 years ago
- Python client for PRIDE Archive Rest API.☆40May 4, 2026Updated 2 weeks ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 10 months ago
- Base Classes and Functions for Mass Spectrometry and Proteomics☆137May 4, 2026Updated 2 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆75Apr 21, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆69Mar 17, 2026Updated 2 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 5 months ago
- Nested cross-validation with feature selection filters☆17Apr 14, 2026Updated last month
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Mar 21, 2026Updated 2 months ago
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆11Jun 18, 2025Updated 11 months ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jul 29, 2020Updated 5 years ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆187Apr 19, 2024Updated 2 years ago
- API libraries, application examples, and custom tools for BaseSpace Clarity LIMS☆19Apr 20, 2026Updated last month
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- ☆11Aug 10, 2023Updated 2 years ago
- A library for deisotoping and charge state deconvolution of complex mass spectra☆41Jul 30, 2025Updated 9 months ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago