An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
☆34Mar 21, 2026Updated 5 months ago
Alternatives and similar repositories for iq
Users that are interested in iq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Report processing and protein quantification for MS-based proteomics☆56Jun 29, 2023Updated 3 years ago
- A python package for fast post translational modification localization, powered by Cython.☆21Dec 15, 2023Updated 2 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆25Aug 19, 2026Updated 2 weeks ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆474Jun 30, 2026Updated 2 months ago
- DEqMS is a tool for quantitative proteomic analysis☆29Apr 16, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Documentation is available here:☆26Jun 10, 2026Updated 2 months ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Oct 23, 2022Updated 3 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 4 months ago
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆62Feb 10, 2026Updated 6 months ago
- An open-source Python package to unify raw MS data accession and storage.☆34Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆61Oct 31, 2025Updated 10 months ago
- PIA - Protein Inference Algorithms☆25Aug 13, 2026Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 9 months ago
- A label free quantification tool.☆20Jan 13, 2026Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆24Feb 26, 2023Updated 3 years ago
- Proteomics Toolset for Integrative Data Analysis☆27Oct 7, 2025Updated 10 months ago
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 6 years ago
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated last year
- modular & open DIA search☆113Updated this week
- R package - MSstats☆101Updated this week
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆36Jul 3, 2026Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆62Jul 15, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Aug 17, 2026Updated 2 weeks ago
- Democratizing ML in proteomics☆57Updated this week
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 11 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆15Jul 1, 2026Updated 2 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Updated this week
- Analytical R Tools for Mass Spectrometry☆13Oct 30, 2025Updated 10 months ago
- Libraries for fine isotopic structure calculator.☆47Aug 13, 2026Updated 2 weeks ago
- ☆13Jan 16, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Deep learning framework for proteomics☆157Jul 30, 2026Updated last month
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 7 years ago
- A cross-platform proteomics data analysis suite☆318Aug 7, 2026Updated 3 weeks ago
- a streamlining post Spectronaut™ DIA-MS data analysis R package☆15Jun 1, 2026Updated 3 months ago
- Peptide Correlation analysis☆13Oct 3, 2024Updated last year
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆45May 9, 2026Updated 3 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆193Apr 19, 2024Updated 2 years ago