Alternatives and similar repositories for MSnbase:

Users that are interested in MSnbase are comparing it to the libraries listed below

• Vitek-Lab / MSstats
  R package - MSstats
  ☆80Updated 3 weeks ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆90Updated last year
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆42Updated last month
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆44Updated 3 weeks ago
• sneumann / xcms
  This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
  ☆193Updated 3 weeks ago
• fgcz / rawrr
  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
  ☆56Updated 3 months ago
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated 10 months ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆12Updated 2 years ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆33Updated this week
• jaspershen / metID
  Construct database and identify metabolites.
  ☆5Updated 2 years ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆62Updated 2 months ago
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆33Updated 2 years ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆27Updated this week
• ahmohamed / lipidr
  Data Mining and Analysis of Lipidomics datasets in R
  ☆29Updated last year
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 3 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆80Updated 4 months ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆39Updated last year
• tidymass / tidymass
  tidymass
  ☆54Updated last year
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆25Updated 7 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆44Updated 3 weeks ago
• ipb-halle / MetFragR
  R package for MetFrag
  ☆24Updated 7 years ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆29Updated 6 months ago
• oloBion / Retip
  Retip - Retention Time prediction for metabolomics
  ☆32Updated 9 months ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated last year
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆27Updated 7 months ago
• Proteomicslab57357 / UniprotR
  Retrieving Information of Proteins from Uniprot
  ☆61Updated 11 months ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆28Updated 3 months ago
• rformassspectrometry / Spectra
  Low level infrastructure to handle MS spectra
  ☆41Updated last week
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆52Updated 3 years ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆45Updated last month