Base Classes and Functions for Mass Spectrometry and Proteomics
☆137Aug 7, 2026Updated this week
Alternatives and similar repositories for MSnbase
Users that are interested in MSnbase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis☆231Updated this week
- Mass spectrometry data visualization☆39Nov 30, 2020Updated 5 years ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆45Mar 31, 2026Updated 4 months ago
- Low level infrastructure to handle MS spectra☆46Aug 5, 2026Updated last week
- PIA - Protein Inference Algorithms☆25Jul 15, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆106Jul 23, 2026Updated 2 weeks ago
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆62Feb 10, 2026Updated 6 months ago
- Quantitative features for mass spectrometry data☆29May 3, 2026Updated 3 months ago
- DEqMS is a tool for quantitative proteomic analysis☆29Apr 16, 2025Updated last year
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- GC/LC-MS data analysis for environmental science☆18Apr 9, 2026Updated 4 months ago
- High level functionality to support and simplify metabolomics data annotation.☆20Aug 5, 2026Updated last week
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆14Jul 1, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 3 months ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated 2 months ago
- R package for MetFrag☆24Sep 25, 2017Updated 8 years ago
- Library for mass spectrometry projects☆28Updated this week
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- Python package for efficient mass spectrometry data processing and visualization☆168Mar 5, 2026Updated 5 months ago
- Organic/biological mass spectrometry data analysis (development version).☆33Jan 27, 2026Updated 6 months ago
- A Thermo XCalibur Method (.meth) file reader, extracter, and converter command-line program for mass spectrometry researchers.☆13Jan 13, 2019Updated 7 years ago
- C# Mass Spectrometry Library☆41Jun 14, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Interpretation of proteomics identification results☆55Aug 1, 2026Updated last week
- Annotation of in source LC/MS data☆13Oct 19, 2024Updated last year
- The codebase of the OpenMS project☆611Updated this week
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆18Nov 14, 2023Updated 2 years ago
- Tools for analysis of Mass Spectrometry data using the Wasserstein metric☆19Jul 14, 2026Updated 3 weeks ago
- A cross-platform proteomics data analysis suite☆314Updated this week
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing …☆11Mar 10, 2025Updated last year
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆250Jul 8, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A library for QC report based on MultiQC framework☆34Jul 27, 2026Updated 2 weeks ago
- A MALDI Mass Spectrometry Bioinformatics Platform☆31Jun 10, 2026Updated 2 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆70Jul 28, 2026Updated 2 weeks ago
- The R for Mass Spectrometry meta-package☆21May 11, 2026Updated 3 months ago
- Robust statistical inference for quantitative LC-MS proteomics☆34Dec 6, 2022Updated 3 years ago
- R package for analysing proteomics data☆49Apr 17, 2023Updated 3 years ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year