cschlaffner / PoGoLinks
PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided gene annotation.
☆11Updated 4 years ago
Alternatives and similar repositories for PoGo
Users that are interested in PoGo are comparing it to the libraries listed below
Sorting:
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆94Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆53Updated 2 weeks ago
- python scripts for proteogenomics analysis☆10Updated 5 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆120Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 5 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 months ago
- PDV: an integrative proteomics data viewer☆53Updated last month
- ☆62Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆84Updated 4 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆101Updated this week
- Python client for PRIDE Archive Rest API.☆24Updated 4 months ago
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 4 months ago
- Python package for investigating the structural context of PTMs☆28Updated 7 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 5 months ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated last month
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆59Updated 2 months ago
- A Python interface to proteomics data repositories☆34Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 8 months ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- A label free quantification tool.☆17Updated last month
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆47Updated last year
- Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments☆12Updated 2 years ago
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆222Updated this week
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆89Updated last year
- Report processing and protein quantification for MS-based proteomics☆46Updated 2 years ago