Alternatives and similar repositories for proteoformer

Users that are interested in proteoformer are comparing it to the libraries listed below

• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆34Updated 5 years ago
• andrewrech / antigen.garnish
  ☆49Updated 3 years ago
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆32Updated 5 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆28Updated last year
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆64Updated 10 months ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆51Updated 5 years ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 4 months ago
• hart-lab / bagel
  BAGEL software
  ☆28Updated last year
• ed-lau / jcast
  Junction centric alternative splicing translator
  ☆20Updated 2 years ago
• andreasmock / MetaboDiff
  ☆31Updated 4 years ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• cnobles / iGUIDE
  Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…
  ☆22Updated last month
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆44Updated 3 months ago
• BGI2016 / PSSMHCpan
  A novel PSSM based software for predicting class I peptide-HLA binding affinity
  ☆17Updated 8 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆47Updated 2 years ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆25Updated 2 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆51Updated 10 months ago
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆19Updated 7 months ago
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆39Updated 3 years ago
• bzhanglab / PepQuery
  PepQuery: a targeted peptide search engine
  ☆12Updated last year
• LukszaLab / NeoantigenEditing
  ☆18Updated 3 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 7 months ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆17Updated 10 months ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆38Updated 3 weeks ago
• gxiaolab / mountainClimber
  ☆20Updated 5 years ago