Biobix / proteoformer

Related projects ⓘ

Alternatives and complementary repositories for proteoformer

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆48Updated last year
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆31Updated 4 years ago
• hart-lab / bagel
  BAGEL software
  ☆26Updated 9 months ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆24Updated last year
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆25Updated 3 months ago
• andrewrech / antigen.garnish
  ☆46Updated 2 years ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆22Updated 4 years ago
• ed-lau / jcast
  Junction centric alternative splicing translator
  ☆19Updated 2 years ago
• andreasmock / MetaboDiff
  ☆30Updated 4 years ago
• djhn75 / RNAEditor
  ☆14Updated 2 years ago
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆30Updated 4 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 3 years ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆34Updated 3 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆34Updated last year
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆22Updated 4 months ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆33Updated 3 weeks ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆28Updated last year
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆29Updated 3 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆19Updated 6 years ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆13Updated last year
• zpliulab / scGENA
  single cell Gene co-Expression Network Analysis
  ☆9Updated 2 years ago
• zwj-tina / GEPIA2021
  ☆14Updated 2 years ago
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆38Updated 2 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆32Updated 5 months ago
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆26Updated 10 months ago
• lagelab / Genoppi
  Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data
  ☆27Updated 6 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆19Updated 11 months ago