Biobix / proteoformerLinks
Integration ribosome profiling - mass spectrometry
☆15Updated 2 weeks ago
Alternatives and similar repositories for proteoformer
Users that are interested in proteoformer are comparing it to the libraries listed below
Sorting:
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- R package for analysing proteomics data☆49Updated 2 years ago
- ☆48Updated 3 years ago
- A tool for large scale omics datasets evaluation☆25Updated 2 years ago
- An r package for proteomics data Analysis, developed from DEP.☆30Updated 3 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated 11 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆63Updated 9 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆16Updated 9 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last week
- ☆31Updated 4 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- ☆15Updated 2 years ago
- R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.☆31Updated last month
- Snakemake pipeline for running MAJIQ☆23Updated last year
- BAGEL software☆27Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 6 months ago
- PepQuery: a targeted peptide search engine☆12Updated last year
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Junction centric alternative splicing translator☆19Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago