Biobix / proteoformer
Integration ribosome profiling - mass spectrometry
☆14Updated last month
Alternatives and similar repositories for proteoformer:
Users that are interested in proteoformer are comparing it to the libraries listed below
- R package for analysing proteomics data☆49Updated 2 years ago
- A tool for large scale omics datasets evaluation☆24Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Snakemake pipeline for running MAJIQ☆22Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- IPAW: a Nextflow workflow for proteogenomics☆27Updated 8 months ago
- documentation for trackViewer☆29Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ☆47Updated 2 years ago
- ☆33Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 6 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 10 months ago
- ☆11Updated 6 years ago
- BAGEL software☆27Updated last year
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- An r package for proteomics data Analysis, developed from DEP.☆29Updated last month
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Updated 5 years ago