Integration ribosome profiling - mass spectrometry
☆15Nov 4, 2025Updated 7 months ago
Alternatives and similar repositories for proteoformer
Users that are interested in proteoformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- Single cell proteomics data processing☆32Apr 6, 2026Updated 2 months ago
- IPAW: a Nextflow workflow for proteogenomics☆29Aug 8, 2024Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆26Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated last month
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Jul 29, 2020Updated 5 years ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆23May 6, 2026Updated last month
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Handy list of network visualisation libraries for R☆12Nov 11, 2019Updated 6 years ago
- SDRF official validator and converts SDRF to pipeline configuration files☆36Updated this week
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 3 weeks ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jun 18, 2025Updated 11 months ago
- Retrieving HGNC gene symbol reports (human genes only) via a list of gene IDs.☆23Oct 15, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- public production version of sequin to share with the public☆11Updated this week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated last month
- Modification-induced misincorporation tRNA sequencing☆24Apr 29, 2026Updated last month
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated 9 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- ☆10Jul 10, 2023Updated 2 years ago
- Implement achievements in your game in a simple way and with minimal security practices.☆11Oct 31, 2023Updated 2 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Test for COVID-19 with the help of OT-2 robots☆12Jun 7, 2020Updated 6 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 4 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- A label free quantification tool.☆19Jan 13, 2026Updated 5 months ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- A home internet server configuration for the BeagleBone Black, Raspberry Pi or Cubieboard☆10Jun 16, 2014Updated 11 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- Full annotation using shape-constrained trees☆31Sep 15, 2023Updated 2 years ago
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 6 months ago
- ☆13Sep 8, 2020Updated 5 years ago
- Web version of GenomeRunner☆11Nov 6, 2016Updated 9 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago