Huber-group-EMBL / NPARC
Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments
☆12Updated last year
Alternatives and similar repositories for NPARC:
Users that are interested in NPARC are comparing it to the libraries listed below
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…☆11Updated 3 years ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- TimsR: Easy access to timsTOF Pro data from R.☆9Updated 3 years ago
- Python client for PRIDE Archive Rest API.☆22Updated last week
- ☆58Updated 10 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆83Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated this week
- R package for optimized LC-MS spectra processing☆24Updated 4 months ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆22Updated 6 years ago
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆25Updated 2 months ago
- ☆29Updated 7 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41Updated this week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 3 weeks ago
- ☆26Updated 2 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- ☆24Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆39Updated last year
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆19Updated 2 months ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated last year
- python scripts for proteogenomics analysis☆10Updated 5 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Python tools for proteogenomics analysis toolkit☆13Updated 11 months ago
- Chemical Similarity Enrichment analysis of metabolomics datasets☆28Updated 8 months ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆10Updated 9 years ago
- Python package for investigating the structural context of PTMs☆28Updated 2 months ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆27Updated last year
- 5-day workshop on Metabolomics and Data Analysis☆16Updated 5 years ago