igordot / babelgene
☆11Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for babelgene
- Core utilities for single-cell RNA-seq☆12Updated 8 months ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆19Updated 3 weeks ago
- Gene-level general linear mixed model☆18Updated last month
- Toolbox package for organizing and working with TCGA data☆23Updated last week
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 3 years ago
- Template for building a bioconductor workshop package using github actions☆19Updated 4 months ago
- Interactive benchmarking of ranking and assignment methods☆14Updated last week
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- Single Cell multimodal data scripts for downloading datasets☆17Updated last week
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 6 months ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Updated 6 months ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- An R package to plot interactive three-way differential expression analysis☆32Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- BioC2020: Where Software and Biology Connect☆12Updated last year
- ☆10Updated last year
- Bioinformatics course (WSBIM1322)☆15Updated last week
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆24Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆20Updated 5 years ago
- Source code for ScanGEO Shiny App☆15Updated 2 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Updated 3 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last week
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆13Updated last week
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 5 months ago