Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomics data, with probabilistic recovery of information from missing values using the detection probability curve.
☆20Feb 21, 2026Updated last week
Alternatives and similar repositories for limpa
Users that are interested in limpa are comparing it to the libraries listed below
Sorting:
- Methods for label-free mass spectrometry proteomics☆15Mar 23, 2025Updated 11 months ago
- Differential Expression Analysis tool box R lang package for omics data☆47Updated this week
- DEqMS is a tool for quantitative proteomic analysis☆24Apr 16, 2025Updated 10 months ago
- An r package for proteomics data Analysis, developed from DEP.☆34Mar 21, 2025Updated 11 months ago
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- R-Shiny GUI integrated with the MSstats package family☆20Updated this week
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated 10 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Feb 18, 2026Updated last week
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- Analysis platform for large-scale dose-dependent data☆26Nov 25, 2025Updated 3 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆21Jan 12, 2026Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Jan 7, 2026Updated last month
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆46Oct 22, 2025Updated 4 months ago
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆27Mar 17, 2025Updated 11 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Updated this week
- DEP package☆30Sep 28, 2022Updated 3 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 4 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Feb 2, 2026Updated 3 weeks ago
- Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal☆33May 27, 2025Updated 9 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 3 years ago
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆26Jun 1, 2023Updated 2 years ago
- Imputing proteomics data using deep learning models☆32Feb 18, 2026Updated last week
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- ☆11Aug 10, 2023Updated 2 years ago
- Scripts and files for the annual Short Read Analysis Workshop☆12Jul 21, 2025Updated 7 months ago
- Unified access to several second-generation deconvolution methods☆95Jan 5, 2026Updated last month
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Apr 14, 2025Updated 10 months ago
- 업무자동화를 위한 Python 강의를 듣고 정리한 자료☆13Oct 10, 2017Updated 8 years ago
- Many Ways to Make and Modify Myriad Networks☆13Feb 18, 2026Updated last week
- A cross-platform proteomics data analysis suite☆277Feb 22, 2026Updated last week
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Feb 20, 2026Updated last week
- Creating package to draw proteins from Uniprot API☆35Feb 2, 2026Updated 3 weeks ago
- R package - MSstats☆92Updated this week
- ☆14Feb 21, 2024Updated 2 years ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 8 months ago
- ☆10May 17, 2017Updated 8 years ago
- This repository is used for the HeaDS git and GitHub workshop 2023☆17Oct 6, 2024Updated last year
- ☆10Dec 17, 2025Updated 2 months ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆17Feb 2, 2026Updated 3 weeks ago