SmythLab / limpaLinks
Quantification and differential analysis of mass-spectrometry proteomics data, with probabilistic recovery of information from missing values using the detection probability curve.
☆14Updated last week
Alternatives and similar repositories for limpa
Users that are interested in limpa are comparing it to the libraries listed below
Sorting:
- Cancer Dependency Map package☆30Updated last year
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 4 months ago
- DEP package☆28Updated 3 years ago
- ☆25Updated 4 months ago
- ☆16Updated 7 months ago
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated 4 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated this week
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆29Updated 11 months ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 3 months ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- ☆18Updated 2 weeks ago
- An R package to plot interactive three-way differential expression analysis☆38Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- Extension of SpatialExperiment with sf☆55Updated last month
- An R package for visualising cell-cell interactions☆43Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 weeks ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 6 months ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Updated last year
- Proteomics Toolset for Integrative Data Analysis☆26Updated 3 weeks ago
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆79Updated 2 weeks ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆16Updated 4 years ago
- Gene-level general linear mixed model☆23Updated 3 weeks ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 3 months ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆21Updated 2 years ago
- Shiny app for the analysis of single cell data☆26Updated last month
- An r package for proteomics data Analysis, developed from DEP.☆31Updated 7 months ago