Alternatives and similar repositories for Proteus:

Users that are interested in Proteus are comparing it to the libraries listed below

• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 4 months ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆24Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated last month
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated 8 months ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆40Updated 2 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆49Updated 5 years ago
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆29Updated 3 weeks ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆14Updated last month
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆14Updated 3 weeks ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆27Updated 8 months ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆32Updated 5 years ago
• wasimaftab / LIMMA-pipeline-proteomics
  LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment
  ☆26Updated last year
• lagelab / Genoppi
  Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data
  ☆26Updated 10 months ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆34Updated 2 weeks ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆19Updated last year
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆22Updated 4 months ago
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆30Updated last year
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆94Updated last year
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆13Updated 2 months ago
• bzhanglab / WebGestaltR
  R package for WebGestalt
  ☆35Updated 2 weeks ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• WangLab-MSSM / DreamAI
  Imputation of missing values of a matrix or data.frame using iterative prediction model
  ☆32Updated last month
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆44Updated 2 weeks ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆21Updated 2 years ago
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆33Updated 11 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆27Updated last week
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated last year
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆23Updated 7 months ago
• tidymass / tidymass
  tidymass
  ☆54Updated last year
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 6 years ago