bartongroup / ProteusView external linksLinks
R package for analysing proteomics data
☆50Apr 17, 2023Updated 2 years ago
Alternatives and similar repositories for Proteus
Users that are interested in Proteus are comparing it to the libraries listed below
Sorting:
- R package - MSstats☆90Jan 29, 2026Updated 2 weeks ago
- ☆13Dec 7, 2025Updated 2 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 3 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 2 months ago
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 3 months ago
- DEqMS is a tool for quantitative proteomic analysis☆24Apr 16, 2025Updated 9 months ago
- Some examples to analyze mass spectrometry data using MALDIquant☆17Oct 13, 2022Updated 3 years ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Oct 2, 2025Updated 4 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Jul 28, 2025Updated 6 months ago
- Algorithmic and Utility Extensions for the Imaris Program☆20Feb 2, 2026Updated last week
- ☆19Jul 8, 2021Updated 4 years ago
- ☆59Nov 21, 2020Updated 5 years ago
- Base Classes and Functions for Mass Spectrometry and Proteomics☆136Aug 26, 2025Updated 5 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Feb 3, 2026Updated last week
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- ☆12Jun 6, 2024Updated last year
- ☆10Mar 11, 2025Updated 11 months ago
- Data Processing Kitchen Sink for proteomics data☆13Jan 13, 2026Updated last month
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- ☆15Jun 11, 2018Updated 7 years ago
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 4 years ago
- ☆10Sep 28, 2017Updated 8 years ago
- ☆28Jan 6, 2026Updated last month
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆51Aug 12, 2025Updated 6 months ago
- Interpretation of proteomics identification results☆53Nov 26, 2025Updated 2 months ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 6 years ago
- Reads data files acquired by MALDI-TOF MS on Bruker Daltonics machines of the *flex series☆14Oct 17, 2025Updated 3 months ago
- An Agentic AI Framework for Ingestion and Standardization of Single-Cell RNA-seq Data Analysis☆38Jan 23, 2026Updated 3 weeks ago
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 2 years ago
- R package for easy interop between Perseus and R☆16Sep 9, 2022Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- ☆40Jan 20, 2026Updated 3 weeks ago
- Workshop materials for shotgun metagenomics☆36Jul 17, 2017Updated 8 years ago
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016☆15Sep 28, 2021Updated 4 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- ☆12Sep 30, 2025Updated 4 months ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 2 years ago