mildpiggy / DEP2Links
An r package for proteomics data Analysis, developed from DEP.
☆30Updated 5 months ago
Alternatives and similar repositories for DEP2
Users that are interested in DEP2 are comparing it to the libraries listed below
Sorting:
- R package for analysing proteomics data☆49Updated 2 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated 3 months ago
- A tool for large scale omics datasets evaluation☆25Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 5 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 8 months ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆26Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- ☆47Updated 8 months ago
- Easy and comprehensive biological network reconstruction and analysis☆32Updated this week
- Bayesian network plot for the enrichment analysis results☆65Updated 11 months ago
- GLASS consortium☆42Updated 5 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 5 months ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆47Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆30Updated 7 years ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- An R interface to enrichR☆92Updated 7 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 9 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- GSCALite: Gene set for cancer analysis☆23Updated 3 years ago