mildpiggy / DEP2Links
An r package for proteomics data Analysis, developed from DEP.
☆29Updated 2 months ago
Alternatives and similar repositories for DEP2
Users that are interested in DEP2 are comparing it to the libraries listed below
Sorting:
- A tool for large scale omics datasets evaluation☆25Updated last year
- R package for analysing proteomics data☆49Updated 2 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆41Updated last week
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆20Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data …☆61Updated 2 months ago
- ☆66Updated 11 months ago
- Methods for label-free mass spectrometry proteomics☆15Updated 2 months ago
- ☆80Updated last year
- Unified access to several second-generation deconvolution methods☆71Updated last month
- Enrichment Networks for Pathway Enrichment Analysis☆52Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆29Updated 4 years ago
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆26Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆23Updated last month
- ☆67Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Bayesian network plot for the enrichment analysis results☆64Updated 8 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆18Updated 3 years ago
- ☆38Updated last week
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 11 months ago
- DEP package☆28Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- collection of notebooks with different cytoscape workflows☆49Updated 2 years ago
- Easy and comprehensive biological network reconstruction and analysis☆29Updated 8 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last week
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 6 years ago