lasersonlab / phip-stat
Analysis tools for PhIP-seq experiments
☆12Updated 3 years ago
Alternatives and similar repositories for phip-stat:
Users that are interested in phip-stat are comparing it to the libraries listed below
- Bayesian enrichment estimation in R☆10Updated 2 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆11Updated last month
- 🐶 hlabud: HLA genotype analysis in R☆16Updated last month
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Kinship In Mixed Model Analysis of RNA-seq☆12Updated 9 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated last year
- ☆13Updated last year
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆10Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 5 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Updated 4 months ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- ☆15Updated 4 months ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated last year
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- ☆11Updated 11 months ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- Clinical Variant Annotation Pipeline☆10Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- k-mer similarity analysis pipeline☆20Updated last month
- iread☆24Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆14Updated 2 years ago
- FunctionaL Omics Processing platform☆13Updated 8 months ago
- ☆26Updated 2 years ago