lasersonlab / phip-statLinks
Analysis tools for PhIP-seq experiments
β12Updated 3 years ago
Alternatives and similar repositories for phip-stat
Users that are interested in phip-stat are comparing it to the libraries listed below
Sorting:
- πΆ hlabud: HLA genotype analysis in Rβ17Updated 8 months ago
- Bayesian enrichment estimation in Rβ11Updated last month
- R package to quickly obtain count vectors from indexed bam filesβ15Updated 6 months ago
- R Interface to the NCBI SRA metadataβ23Updated 7 years ago
- IMSEQ - IMmunogenetic SEQuence Analysisβ15Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)β24Updated 4 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Linksβ16Updated 2 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal dataβ13Updated last week
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.β13Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodesβ10Updated 7 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasetsβ12Updated 10 months ago
- Modeling and correcting fragment sequence bias for RNA-seqβ24Updated last year
- Machine learning use cases for teachingβ13Updated 8 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.β17Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq dataβ26Updated 2 months ago
- Isoform-level functional RNA-Seq analysis π§¬β35Updated last month
- β28Updated 2 years ago
- Comprehensive Human Expressed SequenceSβ18Updated 5 months ago
- TFregulomeR reveals transcription factorsβ context-specific features and functionsβ15Updated 3 years ago
- Telomerecat: The telomere computational analysis toolβ14Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.β21Updated 4 years ago
- β26Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ42Updated 3 years ago
- Infer metadata for your downstream analysis straight from your RNA-Seq dataβ15Updated last year
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: httβ¦β11Updated 2 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logosβ27Updated 7 years ago
- methylR: a single shiny solution from sequencer data to pathway analysisβ12Updated last year
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq dataβ13Updated last year
- integrative pathway analysis with modern PCA methodology and gene selectionβ11Updated 2 years ago
- AnaLysis routines for ePigenomicS data - π« Bioconductor projectβ16Updated 2 years ago