Analysis tools for PhIP-seq experiments
☆13Jan 24, 2022Updated 4 years ago
Alternatives and similar repositories for phip-stat
Users that are interested in phip-stat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 9 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- ☆19Jul 21, 2026Updated last month
- ☆12Mar 12, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- PepSIRF: Peptide-based Serological Immune Response Framework☆11Aug 12, 2026Updated 2 weeks ago
- A viral haplotype reconstruction tool for long reads.☆17Jun 3, 2026Updated 2 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 8 months ago
- The go-to place for materials, contributions and work for the 2015 Mozilla Fellows for Science.☆16Apr 12, 2019Updated 7 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- Racmacs R package for performing antigenic cartography☆24Jul 8, 2026Updated last month
- Repo for NYU's ITP "Quant Humanists: the 'I' in API" course☆16Apr 30, 2018Updated 8 years ago
- Provides listing of nationality that you may need in your ruby applications.☆11Mar 26, 2024Updated 2 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆17Aug 26, 2025Updated last year
- Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schaffli…☆23Jun 17, 2021Updated 5 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 4 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- Spec for BlueButton+ Pull☆20Sep 7, 2015Updated 10 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Updated this week
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆15Jul 1, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- ☆28Feb 6, 2019Updated 7 years ago
- An open-source tool to find and classify phenotypic correlations for variations in whole genomes. (For deployment, use the production bra…☆22May 31, 2010Updated 16 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12May 24, 2022Updated 4 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 6 months ago
- Dataverse Network (DVN) 3.x, distinct from the newer code base at https://github.com/IQSS/dataverse☆25Jun 4, 2015Updated 11 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 4 years ago
- ☆15Mar 13, 2026Updated 5 months ago
- Repository for R package ordbetareg, used to fit continuous data with lower and upper bounds.☆22Aug 7, 2026Updated 3 weeks ago