lasersonlab / phip-stat
Analysis tools for PhIP-seq experiments
β12Updated 2 years ago
Alternatives and similar repositories for phip-stat:
Users that are interested in phip-stat are comparing it to the libraries listed below
- Bayesian enrichment estimation in Rβ10Updated 2 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasetsβ11Updated 2 months ago
- πΆ hlabud: HLA genotype analysis in Rβ16Updated 7 months ago
- β14Updated 2 months ago
- TFregulomeR reveals transcription factorsβ context-specific features and functionsβ16Updated 2 years ago
- R Interface to the NCBI SRA metadataβ23Updated 6 years ago
- FREE Divergence Error-Correcting DNA Barcodesβ8Updated 6 years ago
- β25Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.β12Updated last year
- β12Updated 3 weeks ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Linksβ16Updated last year
- Modeling and correcting fragment sequence bias for RNA-seqβ24Updated 7 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clβ¦β13Updated 5 years ago
- Bedfile perturbation toolβ17Updated last year
- Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)β8Updated 3 years ago
- AnaLysis routines for ePigenomicS data - π« Bioconductor projectβ16Updated last year
- Targeted and non-targeted anticancer drugs and drug regimensβ28Updated last week
- Create a cromphensive report of DEG list coming from any analysis of RNAseq dataβ24Updated 10 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Softwareβ16Updated 2 months ago
- Clinical Variant Annotation Pipelineβ10Updated 4 years ago
- β19Updated last month
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)β10Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.β28Updated 5 months ago
- ireadβ23Updated 3 years ago
- Building the constrained coding regions (CCR) modelβ16Updated 6 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.β14Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.β17Updated last week
- Kinship In Mixed Model Analysis of RNA-seqβ11Updated 7 months ago
- methylR: a single shiny solution from sequencer data to pathway analysisβ11Updated 2 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ17Updated last year