lehtiolab / proteogenomics-analysis-workflow

Related projects ⓘ

Alternatives and complementary repositories for proteogenomics-analysis-workflow

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆48Updated last year
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆14Updated 2 months ago
• yafeng / proteogenomics_python
  python scripts for proteogenomics analysis
  ☆10Updated 5 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆31Updated 4 years ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆22Updated 4 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆34Updated last year
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆38Updated 2 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆46Updated last year
• andrewrech / antigen.garnish
  ☆46Updated 2 years ago
• griffithlab / rnaseq_tutorial_wiki
  The wiki repo, with pull request enabled, for the rnaseq_tutorial
  ☆25Updated 4 years ago
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆31Updated 6 months ago
• andreasmock / MetaboDiff
  ☆30Updated 4 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆33Updated 3 weeks ago
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆30Updated 4 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆46Updated last month
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆62Updated 4 years ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆39Updated 4 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆45Updated 10 months ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆27Updated last month
• eturro / mmseq
  Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
  ☆67Updated 8 months ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆34Updated 3 years ago
• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆53Updated 3 years ago
• lagelab / Genoppi
  Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data
  ☆27Updated 6 months ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆22Updated 4 months ago
• Alex-Rosenberg / cell-2015
  Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
  ☆32Updated 8 years ago
• lfresard / blood_rnaseq_rare_disease_paper
  ☆29Updated 5 years ago
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last month
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago