lehtiolab / proteogenomics-analysis-workflowLinks
IPAW: a Nextflow workflow for proteogenomics
☆29Updated last year
Alternatives and similar repositories for proteogenomics-analysis-workflow
Users that are interested in proteogenomics-analysis-workflow are comparing it to the libraries listed below
Sorting:
- A guide to running MaxQuant in Linux☆35Updated 6 years ago
- Galaxy RNA workbench☆41Updated 5 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 3 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- An interactive web-tool for RNA-seq analysis☆70Updated last month
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- ☆38Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- R package for analysing proteomics data☆50Updated 2 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Updated 4 years ago
- ☆42Updated 7 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- Visual exploratory analysis of gene expression data☆45Updated 2 months ago
- Integration ribosome profiling - mass spectrometry☆15Updated 3 months ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Updated 10 years ago
- ☆48Updated 3 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆74Updated this week