IPAW: a Nextflow workflow for proteogenomics
☆29Aug 8, 2024Updated 2 years ago
Alternatives and similar repositories for proteogenomics-analysis-workflow
Users that are interested in proteogenomics-analysis-workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 9 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Mar 26, 2026Updated 4 months ago
- DEqMS is a tool for quantitative proteomic analysis☆29Apr 16, 2025Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Jul 18, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A fast, easy way to present complex bioinformatics pipelines to biologists☆12Sep 28, 2018Updated 7 years ago
- Single cell proteomics data processing☆33Jul 23, 2026Updated 3 weeks ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 3 years ago
- ☆11Mar 23, 2022Updated 4 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 10 months ago
- Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"☆35Apr 29, 2019Updated 7 years ago
- SAveRUNNER (Searching off-lAbel dRUg aNd NEtwoRk) - a network-based approach for drug repurposing☆14Nov 27, 2024Updated last year
- PDV: an integrative proteomics data viewer☆68Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).☆10Apr 15, 2026Updated 4 months ago
- Python client for PRIDE Archive Rest API.☆41Jul 29, 2026Updated 2 weeks ago
- R package for functionally scoring phosphorylation sites☆22Nov 3, 2019Updated 6 years ago
- Master of Pores 2☆23Dec 4, 2024Updated last year
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 6 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Subgraph for Curve.fi☆10Mar 20, 2021Updated 5 years ago
- Test for COVID-19 with the help of OT-2 robots☆12Jun 7, 2020Updated 6 years ago
- Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity☆14Nov 21, 2019Updated 6 years ago
- A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python…☆16Apr 17, 2025Updated last year
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 4 months ago
- ☆12Apr 21, 2016Updated 10 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A bioinformatics toolset for multiomic analysis☆21Aug 7, 2026Updated last week
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 3 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 8 months ago
- ☆16May 27, 2026Updated 2 months ago
- See: https://www.iscb.org/ismb2018/3511#am1☆18Sep 10, 2018Updated 7 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 9 months ago
- Flask REST API for Open Targets Platform☆13Feb 9, 2021Updated 5 years ago