Alternatives and similar repositories for proteoQ

Users that are interested in proteoQ are comparing it to the libraries listed below

• vsegurar / DeepMSPeptide
  ☆17Updated 5 years ago
• jaspershen / MetNormalizer
  MetNormalizer is used to normalize large scale metabolomics data.
  ☆22Updated 4 years ago
• ZhuMetLab / MetDNA2
  Knowledge-guided multilayer network approach is executed in MetDNA2
  ☆16Updated 2 years ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 4 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆29Updated 11 months ago
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆25Updated last month
• wilsontom / msconverteR
  Create .mzML files through the R Console
  ☆11Updated 3 years ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆19Updated last year
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆16Updated 2 years ago
• hcji / DeepMASS2_GUI
  DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…
  ☆9Updated last week
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated last month
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• rformassspectrometry / MetaboAnnotation
  High level functionality to support and simplify metabolomics data annotation.
  ☆16Updated 3 weeks ago
• dphansti / CORAL
  ☆28Updated 3 years ago
• yufree / xcmsrocker
  Rocker image for metabolomics data analysis
  ☆13Updated 3 weeks ago
• wind22zhu / BioMedR
  generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.
  ☆16Updated 5 years ago
• ZhuMSLab / MetDNA
  All the source code of MetDNA.
  ☆17Updated 3 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• pmartR / pmartR
  The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…
  ☆43Updated last week
• PHOENIXcenter / deeprtalign
  a deep learning-based retention time alignment tool for large cohort LC-MS data analysis
  ☆12Updated last year
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 4 years ago
• ipb-halle / MetFragR
  R package for MetFrag
  ☆24Updated 7 years ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆62Updated 2 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 2 months ago
• JamesGallant / ProVision
  Shiny app for proteomics data analysis
  ☆14Updated 3 years ago
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆16Updated last year
• ODonnell-Lipidomics / LipidFinder
  LipidFinder: A computational workflow for discovery of new lipid molecular species
  ☆20Updated 4 years ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆19Updated last week
• jaspershen / metID
  Construct database and identify metabolites.
  ☆5Updated 2 years ago