Alternatives and similar repositories for proteoQ

Users that are interested in proteoQ are comparing it to the libraries listed below

• vsegurar / DeepMSPeptide
  ☆17Updated 5 years ago
• wind22zhu / BioMedR
  generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.
  ☆16Updated 5 years ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆16Updated 2 years ago
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆19Updated last year
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Updated last year
• markmipt / ms1searchpy
  ☆12Updated last month
• PHOENIXcenter / deeprtalign
  a deep learning-based retention time alignment tool for large cohort LC-MS data analysis
  ☆12Updated last year
• hcji / DeepMASS2_GUI
  DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…
  ☆9Updated 3 weeks ago
• idrblab / NOREVA
  R Package for Systematic Optimization of Metabolomic Data Processing
  ☆17Updated 3 months ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆12Updated 2 months ago
• jessegmeyerlab / PeCorA
  Peptide Correlation analysis
  ☆10Updated 9 months ago
• bihealth / NeatMS
  NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.
  ☆32Updated 3 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆23Updated 4 years ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• dphansti / CORAL
  ☆29Updated 3 years ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 4 years ago
• SlavovLab / plexDIA
  Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.
  ☆11Updated 4 months ago
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆16Updated last year
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆28Updated last month
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆30Updated last year
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆25Updated 2 months ago
• pFindStudio / pDeep
  pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
  ☆38Updated 5 years ago
• mciach / masserstein
  Tools for analysis of Mass Spectrometry data using the Wasserstein metric
  ☆17Updated 7 months ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated last year
• MRMkit / MRMkit
  ☆9Updated last month
• zamboni-lab / SLAW
  Scalable and self-optimizing processing workflow for untargeted LC-MS
  ☆28Updated 11 months ago
• HuanLab / ISFrag
  A bioinformatic tool facilitating automated in-source fragmentation identification
  ☆10Updated 2 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆29Updated 11 months ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated last month
• ZhuMetLab / MetDNA2
  Knowledge-guided multilayer network approach is executed in MetDNA2
  ☆16Updated 2 years ago