Processing and analysis of proteomics data
☆18Oct 28, 2026Updated this week
Alternatives and similar repositories for proteoQ
Users that are interested in proteoQ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for simulating and analyzing temporally autocorrelated populations.☆10Apr 11, 2024Updated 2 years ago
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆37Jul 3, 2026Updated 3 months ago
- R package for extracting actigraphy counts from accelerometer data.☆12Oct 15, 2026Updated 2 weeks ago
- ☆11Nov 11, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains python implementations of statistical tests.☆12Aug 17, 2023Updated 3 years ago
- ☆15Jul 7, 2023Updated 3 years ago
- Confidence Estimation for Mass Spectrometry Proteomics☆17Sep 17, 2026Updated last month
- ☆17Jun 15, 2022Updated 4 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆60Oct 19, 2026Updated last week
- ☆13Oct 14, 2026Updated 2 weeks ago
- Statistical modeling and Bayesian modeling by PyMC3, Stan and TensorFlow Probability☆23Dec 31, 2019Updated 6 years ago
- Resources for creating mixed-effects models as analogues for ANOVA and for truly longitudinal models.☆26Aug 17, 2026Updated 2 months ago
- LIMPA DAVIS Proteomics Pipeline☆21Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Parse the Dirtywave M8's file formats☆16Feb 21, 2025Updated last year
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)☆16Feb 9, 2026Updated 8 months ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆24May 22, 2025Updated last year
- Implements the blood brain barrier score described in: J. Med. Chem. 2019, 62, 21, 9824-9836 (https://doi.org/10.1021/acs.jmedchem.9b0122…☆14Sep 27, 2020Updated 6 years ago
- User interface to reanalyze and explore all public data in Metabolomics Public Data☆12Oct 18, 2023Updated 3 years ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 7 years ago
- Repository for managing the Data Science in Practice website.☆22Oct 29, 2023Updated 3 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- The official codebase for the paper "A Hitchhiker's Guide to Deep Chemical Language Processing for Bioactivity Prediction"☆13Mar 26, 2025Updated last year
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆56May 2, 2022Updated 4 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆51Jul 13, 2026Updated 3 months ago
- ☆23Jan 25, 2023Updated 3 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- An R package for conducting co-localization analysis. Edit☆26Jan 4, 2020Updated 6 years ago
- ☆24Feb 26, 2023Updated 3 years ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 5 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆90Nov 21, 2025Updated 11 months ago
- AttentionDTA: prediction of drug–target binding affinity using attention model.https://ieeexplore.ieee.org/abstract/document/8983125☆13Aug 29, 2020Updated 6 years ago
- ☆14Oct 4, 2022Updated 4 years ago
- Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2☆15May 7, 2021Updated 5 years ago
- ☆22Jun 28, 2021Updated 5 years ago