Processing and analysis of proteomics data
☆17Sep 30, 2026Updated last week
Alternatives and similar repositories for proteoQ
Users that are interested in proteoQ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for simulating and analyzing temporally autocorrelated populations.☆10Apr 11, 2024Updated 2 years ago
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- R package for extracting actigraphy counts from accelerometer data.☆12Jun 3, 2026Updated 4 months ago
- Confidence Estimation for Mass Spectrometry Proteomics☆17Sep 17, 2026Updated 3 weeks ago
- ☆11Nov 11, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Resources for creating mixed-effects models as analogues for ANOVA and for truly longitudinal models.☆26Aug 17, 2026Updated last month
- ☆15Jul 7, 2023Updated 3 years ago
- ☆13Sep 18, 2026Updated 3 weeks ago
- This repository contains python implementations of statistical tests.☆12Aug 17, 2023Updated 3 years ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- ☆17Jun 15, 2022Updated 4 years ago
- Statistical modeling and Bayesian modeling by PyMC3, Stan and TensorFlow Probability☆23Dec 31, 2019Updated 6 years ago
- A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)☆16Feb 9, 2026Updated 8 months ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆24May 22, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository for managing the Data Science in Practice website.☆22Oct 29, 2023Updated 2 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 3 years ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 7 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated 2 months ago
- ☆23Jan 25, 2023Updated 3 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆56May 2, 2022Updated 4 years ago
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 5 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- mesa package for Methylation Enrichment Sequencing Analysis☆16Updated this week
- Universal audio sample manager for hardware samplers (M8, MPC One, SP-404mkII). Browse, preview, listen, and organise your sample library…☆27Jul 6, 2026Updated 3 months ago
- ☆24Feb 26, 2023Updated 3 years ago
- An R package for conducting co-localization analysis. Edit☆26Jan 4, 2020Updated 6 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆89Nov 21, 2025Updated 10 months ago
- DEqMS is a tool for quantitative proteomic analysis☆30Apr 16, 2025Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆60Aug 28, 2026Updated last month
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Sep 22, 2026Updated 2 weeks ago
- An Integrative Drug Repurposing Pipeline using KNIME and Programmatic Data Access: A case study on COVID-19 Data☆15Sep 29, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Jun 28, 2021Updated 5 years ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated 2 years ago
- Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2☆15May 7, 2021Updated 5 years ago
- ☆14Oct 4, 2022Updated 4 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆133Jul 31, 2026Updated 2 months ago
- MolDesigner: Interactive Design of Efficacious Drugs with Deep Learning (NeurIPS 2020 Demo)☆16Nov 27, 2020Updated 5 years ago
- A comprehensive pipeline for Ribo-seq data analysis☆11Jun 27, 2025Updated last year