Alternatives and similar repositories for proDA

Users that are interested in proDA are comparing it to the libraries listed below

• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated last month
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆65Updated last month
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 9 months ago
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆34Updated 10 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆47Updated last month
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆23Updated 2 years ago
• arnesmits / DEP
  DEP package
  ☆30Updated 3 years ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆20Updated 9 months ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆26Updated 3 weeks ago
• tidymass / tidymass
  tidymass
  ☆60Updated 2 weeks ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆32Updated last week
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 10 months ago
• metaOmics / metaOmics
  Shiny GUI application for genomics meta-analysis
  ☆22Updated 5 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last month
• pnnl / leapR
  ☆18Updated last week
• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆35Updated 4 months ago
• krumsieklab / maplet
  R statistical toolbox for metabolomics
  ☆24Updated 9 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆75Updated 3 months ago
• wangshisheng / NAguideR
  NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses
  ☆51Updated 5 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated 2 years ago
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆25Updated last month
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆26Updated last year
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• snystrom / memes
  An R interface to the MEME Suite
  ☆54Updated last month
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆26Updated last year
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• bayesrx / SpaceX
  SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics
  ☆20Updated 2 years ago
• brennanpincardiff / drawProteins
  Creating package to draw proteins from Uniprot API
  ☆35Updated this week