sunyumail93 / PipeRNAseq
A comprehensive pipeline for RNAseq data analysis
☆22Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for PipeRNAseq
- ☆15Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆11Updated last month
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆16Updated 4 months ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆22Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 10 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆17Updated 4 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆19Updated 2 years ago
- Genome haplotype assembly and assessment method☆11Updated 11 months ago
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- ☆24Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago
- Scripts that used in our chicken T2T manuscript.☆18Updated last year
- ☆21Updated 2 years ago
- ☆16Updated 4 years ago
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- ☆21Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆23Updated 6 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆25Updated last year
- The cattle Genotype-Tissue Expression atlas v1☆22Updated last year
- ☆14Updated 9 months ago
- ☆12Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆27Updated last year
- A pipeline for isoseq☆23Updated 6 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format☆27Updated last month
- Whole Genome Annotation Pipeline☆15Updated 7 months ago
- ☆16Updated last month
- Resistify is a command line program that identifies and classifies NLRs from protein sequences☆26Updated this week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆21Updated 2 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago