sunyumail93 / PipeRNAseq
A comprehensive pipeline for RNAseq data analysis
☆22Updated 7 months ago
Alternatives and similar repositories for PipeRNAseq:
Users that are interested in PipeRNAseq are comparing it to the libraries listed below
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- ☆15Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- The cattle Genotype-Tissue Expression atlas v1☆23Updated 2 years ago
- ☆23Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- R package to explore active transposable elements with RNA-seq data☆20Updated 2 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆17Updated 2 weeks ago
- ☆14Updated 4 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆21Updated 10 months ago
- Genome haplotype assembly and assessment method☆12Updated last year
- ☆24Updated 2 years ago
- an efficient Hi-C data processing pipeline☆16Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 4 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 9 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- I often use some of the self-written programs.☆15Updated 3 weeks ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- ☆16Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated last month
- ☆10Updated 3 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated last year
- ☆19Updated 8 months ago
- tutorial on pggb☆32Updated 3 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 3 weeks ago