dtm2451 / dittoSeq
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
☆198Updated 7 months ago
Alternatives and similar repositories for dittoSeq:
Users that are interested in dittoSeq are comparing it to the libraries listed below
- Fast Wilcoxon and auROC☆180Updated 6 months ago
- Clone of the Bioconductor repository for the SingleR package.☆188Updated 2 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆192Updated 3 weeks ago
- Interactively analyze single cell genomic data☆182Updated this week
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆190Updated this week
- ☆166Updated this week
- Gene set variation analysis☆216Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆253Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆275Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆191Updated last month
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆229Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆222Updated last week
- Shiny Interactive Web Apps for Single-Cell Data☆184Updated 2 weeks ago
- Easy single cell analysis platform for enrichment☆174Updated 3 weeks ago
- Gene set scoring for single-cell data☆149Updated this week
- Interpretation of cell states using reference single-cell maps☆271Updated 3 weeks ago
- A Shiny web app for mapping datasets using Seurat v4☆126Updated 6 months ago
- ☆134Updated 3 weeks ago
- Dataset distribution for Seurat☆137Updated 2 months ago
- Tools and methods for analysis of single cell assay data in R☆238Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 8 months ago
- R package to infer biological activities from omics data using a collection of methods.☆248Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆201Updated 9 months ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆84Updated 6 months ago
- Cell type prioritization in single-cell data☆118Updated 6 months ago
- A toolkit for single-cell immune profiling☆332Updated this week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆257Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆371Updated 5 months ago
- RNA velocity estimation in R