dtm2451 / dittoSeq
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
☆193Updated 4 months ago
Alternatives and similar repositories for dittoSeq:
Users that are interested in dittoSeq are comparing it to the libraries listed below
- Fast Wilcoxon and auROC☆172Updated 2 months ago
- Gene set variation analysis☆208Updated 2 weeks ago
- Clone of the Bioconductor repository for the SingleR package.☆182Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆177Updated 3 months ago
- Easy single cell analysis platform for enrichment☆158Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆237Updated 2 weeks ago
- R package to infer biological activities from omics data using a collection of methods.☆219Updated 3 months ago
- Interactively analyze single cell genomic data☆181Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆263Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆177Updated 3 weeks ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆217Updated last month
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆172Updated this week
- The package wrapping the book, for deployment via the Bioconductor build system.☆84Updated 2 months ago
- ☆159Updated 5 months ago
- Shiny Interactive Web Apps for Single-Cell Data☆168Updated 11 months ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆135Updated 2 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- Cell type prioritization in single-cell data☆107Updated 3 months ago
- Gene set scoring for single-cell data☆143Updated 2 months ago
- ☆119Updated 2 weeks ago
- A Shiny web app for mapping datasets using Seurat v4☆119Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆351Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆262Updated 2 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆244Updated this week
- Significance analysis for clustering single-cell RNA-sequencing data☆108Updated 4 months ago
- Scaling Single Cell Analysis to Millions of Cells☆177Updated this week
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆220Updated 11 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆188Updated 5 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆157Updated last year
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 4 years ago