Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
☆215Dec 10, 2025Updated 4 months ago
Alternatives and similar repositories for dittoSeq
Users that are interested in dittoSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clone of the Bioconductor repository for the SingleR package.☆202Apr 8, 2026Updated 3 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆323Nov 1, 2022Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆240May 8, 2023Updated 2 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆227Apr 28, 2026Updated last week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 3 months ago
- A toolkit for single-cell immune profiling☆369Apr 24, 2026Updated last week
- High dimensional weighted gene co-expression network analysis☆472Mar 13, 2026Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆297Updated this week
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated last month
- Some tools for plotting single-cell data☆178May 17, 2025Updated 11 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆328Apr 23, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆545Mar 21, 2025Updated last year
- Assessing the purity of single cell population☆146Jun 3, 2022Updated 3 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 3 months ago
- Fast Wilcoxon and auROC☆207Nov 8, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆429Apr 27, 2026Updated last week
- ☆448Updated this week
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆220Mar 2, 2026Updated 2 months ago
- Accurate and fast cell marker gene identification with COSG☆64Feb 8, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Methods for detecting doublets in single-cell sequencing data☆246Feb 12, 2026Updated 2 months ago
- Tools and methods for analysis of single cell assay data in R☆263Oct 17, 2025Updated 6 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆224Apr 26, 2026Updated last week
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jun 19, 2025Updated 10 months ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆293Dec 16, 2025Updated 4 months ago
- NicheNet: predict active ligand-target links between interacting cells☆639Nov 12, 2025Updated 5 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆643Apr 21, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-subject Single Cell Deconvolution☆296Mar 4, 2024Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- R package for single cell and other data analysis using diffusion maps☆99Apr 15, 2026Updated 2 weeks ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆538Apr 6, 2026Updated 3 weeks ago
- ☆217Mar 26, 2026Updated last month
- Conversion between scRNA-seq objects☆207Apr 16, 2026Updated 2 weeks ago
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago