dtm2451 / dittoSeqLinks
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
☆213Updated 2 months ago
Alternatives and similar repositories for dittoSeq
Users that are interested in dittoSeq are comparing it to the libraries listed below
Sorting:
- Fast Wilcoxon and auROC☆204Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆217Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆199Updated last month
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆216Updated last month
- Easy single cell analysis platform for enrichment☆211Updated last month
- Shiny Interactive Web Apps for Single-Cell Data☆203Updated 9 months ago
- Gene set variation analysis☆231Updated last month
- Interactively analyze single cell genomic data☆184Updated 3 weeks ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Updated 4 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆288Updated 2 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- ☆181Updated 9 months ago
- RNA velocity estimation in R☆194Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year
- Gene set scoring for single-cell data☆180Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆285Updated last month
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- Tools and methods for analysis of single cell assay data in R☆260Updated 3 months ago
- ☆203Updated 2 months ago
- Some tools for plotting single-cell data☆177Updated 8 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Updated 5 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆289Updated 7 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆231Updated last year
- Conversion between scRNA-seq objects☆198Updated last month
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆248Updated last month
- Interfaces for HDF5-based Single Cell File Formats☆170Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Updated last week
- Interpretation of cell states using reference single-cell maps☆309Updated last month
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- AUCell: score single cells with gene regulatory networks☆183Updated last year