Alternatives and similar repositories for dittoSeq

Users that are interested in dittoSeq are comparing it to the libraries listed below

• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆198Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆198Updated last month
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆212Updated last month
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆200Updated 7 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 2 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆230Updated this week
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆199Updated last week
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆212Updated 3 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆275Updated this week
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆258Updated last month
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆148Updated 9 months ago
• neurorestore / Libra
  ☆178Updated 7 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆139Updated last year
• huayc09 / SeuratExtend
  ☆193Updated 3 weeks ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆171Updated last month
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆279Updated this week
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆184Updated 4 years ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆191Updated 2 years ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 6 months ago
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆284Updated 5 months ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆244Updated this week
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆300Updated 3 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆128Updated last year
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆109Updated last year
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆242Updated 7 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆218Updated last month
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆97Updated last year
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆315Updated last year