xia-lab / MetaboAnalystR

Related projects ⓘ

Alternatives and complementary repositories for MetaboAnalystR

• ctlab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆379Updated last month
• kevinblighe / EnhancedVolcano
  Publication-ready volcano plots with enhanced colouring and labeling
  ☆413Updated 5 months ago
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆184Updated this week
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆313Updated last week
• noriakis / ggkegg
  Analyzing and visualizing KEGG information using the grammar of graphics
  ☆215Updated 2 weeks ago
• mixOmicsTeam / mixOmics
  Development repository for the Bioconductor package 'mixOmics '
  ☆162Updated this week
• kpatel427 / YouTubeTutorials
  ☆291Updated last month
• omarwagih / ggseqlogo
  Publication-quality sequence logos in R
  ☆208Updated last month
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆360Updated last week
• microbiome / microbiome
  microbiome R package
  ☆289Updated last year
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆232Updated 2 weeks ago
• wilkox / gggenes
  ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
  ☆500Updated 8 months ago
• hbctraining / DGE_workshop
  ☆374Updated 2 years ago
• YuLab-SMU / clusterProfiler
  A universal enrichment tool for interpreting omics data
  ☆1,024Updated last week
• bioFAM / MOFA2
  Multi-Omics Factor Analysis
  ☆306Updated 4 months ago
• benjjneb / dada2
  Accurate sample inference from amplicon data with single nucleotide resolution
  ☆471Updated this week
• joey711 / phyloseq
  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…
  ☆584Updated 6 months ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆226Updated 3 weeks ago
• hbctraining / DGE_workshop_salmon_online
  ☆178Updated 3 weeks ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆459Updated 2 weeks ago
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆299Updated 10 months ago
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆450Updated 2 weeks ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆182Updated 2 weeks ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆117Updated 4 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆162Updated last year
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆117Updated last week
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆191Updated 4 months ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆206Updated last week
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆187Updated 8 months ago
• mikelove / bioc-refcard
  Bioconductor cheat sheet
  ☆187Updated 2 months ago