Neural networks for microbe-metabolite interaction analysis
☆133Nov 4, 2022Updated 3 years ago
Alternatives and similar repositories for mmvec
Users that are interested in mmvec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Oct 9, 2020Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- Vanilla regression methods for microbiome differential abundance analysis☆62Nov 3, 2020Updated 5 years ago
- ☆20Jun 8, 2020Updated 6 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated last month
- ☆23Nov 6, 2020Updated 5 years ago
- bioBakery tools for meta'omic profiling☆319Updated this week
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Jun 13, 2026Updated last month
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- ☆12Feb 26, 2019Updated 7 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆393Nov 27, 2025Updated 7 months ago
- A manually curated database of human gut metabolic modules.☆19Jul 27, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆232Apr 29, 2026Updated 2 months ago
- ☆81Oct 16, 2024Updated last year
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated 10 months ago
- ☆15May 7, 2022Updated 4 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆459Feb 13, 2026Updated 5 months ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Nov 10, 2022Updated 3 years ago
- A companion R package for the MicrobiomeAnalyst web server☆133Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Dec 1, 2025Updated 7 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 5 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Web-based software for visualization of molecular maps in 2D and 3D☆28Jul 31, 2023Updated 2 years ago
- Variational autoencoder for metagenomic binning☆330Apr 27, 2026Updated 2 months ago
- ☆20Jul 12, 2023Updated 3 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Apr 25, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 4 months ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆248Jul 10, 2026Updated last week
- ☆19Dec 16, 2024Updated last year
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆141Apr 27, 2026Updated 2 months ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆107Sep 17, 2022Updated 3 years ago