biocore / mmvecLinks
Neural networks for microbe-metabolite interaction analysis
☆123Updated 2 years ago
Alternatives and similar repositories for mmvec
Users that are interested in mmvec are comparing it to the libraries listed below
Sorting:
- ☆74Updated 10 months ago
- Curated Metagenomic Data of the Human Microbiome☆139Updated last month
- A companion R package for the MicrobiomeAnalyst web server☆127Updated 2 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆145Updated 9 months ago
- gutSMASH☆55Updated 8 months ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆106Updated last week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆157Updated last year
- ☆37Updated 3 years ago
- Fast and flexible ORF finder☆73Updated 3 years ago
- Analyses in R and Python Using curatedMetagenomicData☆32Updated this week
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- MGnify genome analysis pipeline☆107Updated 3 weeks ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆99Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 2 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆186Updated this week
- High-quality circular representations of taxonomic and phylogenetic trees☆104Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Updated 5 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆37Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 11 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆34Updated 2 months ago
- Bioinformatics Tools☆89Updated this week
- Various bioinformatics tutorials☆61Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆129Updated last week
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 4 months ago
- ☆57Updated last year
- Woltka: a versatile meta'omic data classifier☆76Updated 5 months ago