biocore / mmvecLinks
Neural networks for microbe-metabolite interaction analysis
☆126Updated 3 years ago
Alternatives and similar repositories for mmvec
Users that are interested in mmvec are comparing it to the libraries listed below
Sorting:
- ☆78Updated last year
- Curated Metagenomic Data of the Human Microbiome☆150Updated 2 weeks ago
- A companion R package for the MicrobiomeAnalyst web server☆131Updated this week
- ☆37Updated 4 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆39Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆150Updated this week
- Analyses in R and Python Using curatedMetagenomicData☆33Updated 2 months ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆104Updated 3 years ago
- gutSMASH☆57Updated 4 months ago
- Python package to study microbial communities using metabolic modeling.☆115Updated 2 weeks ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- High-quality circular representations of taxonomic and phylogenetic trees☆106Updated last year
- MGnify genome analysis pipeline☆108Updated last month
- Fast and flexible ORF finder☆78Updated 4 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆168Updated last month
- ☆58Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆123Updated last year
- ☆39Updated 2 years ago
- Cross-disease comparison of case-control gut microbiome studies☆69Updated 7 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆101Updated 6 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 5 months ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Updated 3 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- ☆34Updated last year
- Woltka: a versatile meta'omic data classifier☆76Updated 5 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆142Updated last month
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆119Updated 2 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago