Alternatives and similar repositories for mmvec:

Users that are interested in mmvec are comparing it to the libraries listed below

• borenstein-lab / microbiome-metabolome-curated-data
  ☆61Updated 4 months ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆129Updated last week
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆121Updated last week
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆36Updated 10 months ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆115Updated 9 months ago
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆57Updated 5 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 2 months ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆132Updated 3 months ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆151Updated 9 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆69Updated 3 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 2 months ago
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆115Updated last week
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆104Updated this week
• cduvallet / microbiomeHD
  Cross-disease comparison of case-control gut microbiome studies
  ☆68Updated 6 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆29Updated last month
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆105Updated last year
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆92Updated 2 years ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆109Updated last month
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆71Updated 2 years ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆43Updated 3 years ago
• knights-lab / MLRepo
  ☆37Updated 3 years ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆61Updated 2 years ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆90Updated last year
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆90Updated 2 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆174Updated this week
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆72Updated 4 months ago
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆185Updated 6 months ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆27Updated last year