bulksoil / BioProtocol
Repo for a Microbiome Protocol
☆10Updated 6 years ago
Alternatives and similar repositories for BioProtocol:
Users that are interested in BioProtocol are comparing it to the libraries listed below
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Transform files to the microtable object with microeco package☆25Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆12Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 10 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- ☆10Updated 2 weeks ago
- ☆20Updated 2 years ago
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 5 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- ☆40Updated 7 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- ☆8Updated 5 years ago
- ☆26Updated last year
- functions for analyzing phyloseq data☆26Updated last month
- dada2 formatted nifH database☆11Updated 10 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆29Updated 8 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- ☆12Updated last year
- Utilities for community ecology analysis☆18Updated 4 years ago