bulksoil / BioProtocolLinks
Repo for a Microbiome Protocol
☆10Updated 7 years ago
Alternatives and similar repositories for BioProtocol
Users that are interested in BioProtocol are comparing it to the libraries listed below
Sorting:
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- Transform files to the microtable object with microeco package☆27Updated 4 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- ☆76Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- ☆12Updated 3 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆48Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- ☆23Updated 6 years ago
- ☆13Updated 4 years ago
- R implementation of the LEfSe method☆59Updated 3 months ago
- ☆11Updated 3 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆116Updated this week
- ☆41Updated 7 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- R package for microbiome biomarker discovery☆187Updated 5 months ago
- SourceTracker2☆78Updated last year
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 5 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Miscellaneous functions for metagenomic analysis.☆50Updated 2 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Look Up Guild Information for Fungi in R☆22Updated 4 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆124Updated 2 months ago