bulksoil / BioProtocol
Repo for a Microbiome Protocol
☆9Updated 6 years ago
Alternatives and similar repositories for BioProtocol:
Users that are interested in BioProtocol are comparing it to the libraries listed below
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- ☆9Updated last month
- Various functions for analysis of microbial community data☆42Updated 2 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- functions for analyzing phyloseq data☆26Updated last week
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆27Updated 6 months ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- ☆20Updated last year
- Look Up Guild Information for Fungi in R☆19Updated last year
- Transform files to the microtable object with microeco package☆24Updated last month
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 7 months ago
- dada2 formatted nifH database☆11Updated 8 months ago
- ☆11Updated 10 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆21Updated 2 years ago
- ☆12Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated last week
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- ☆39Updated 7 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 5 years ago
- Analysis code for a manuscript on community similarity computation☆14Updated 5 years ago
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 6 years ago