lch14forever / microbiomeVizLinks
Visualize microbiome data with black magic ggtree
☆68Updated 4 years ago
Alternatives and similar repositories for microbiomeViz
Users that are interested in microbiomeViz are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- R implementation of the LEfSe method☆59Updated 3 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- R shiny app for interactive microbiome analysis☆55Updated 2 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 weeks ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- ☆41Updated 7 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆116Updated last week
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- ☆76Updated last year
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- A microbiome analysis toolkit for R☆24Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆43Updated last week
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆124Updated 2 months ago
- Transform files to the microtable object with microeco package☆27Updated 4 months ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- ☆57Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- SourceTracker2☆78Updated last year
- functions to analyse sanger sequencing reads in R☆101Updated 5 months ago