Visualize microbiome data with black magic ggtree
☆68Sep 3, 2020Updated 5 years ago
Alternatives and similar repositories for microbiomeViz
Users that are interested in microbiomeViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆74Sep 1, 2022Updated 3 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 3 months ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package for microbiome biomarker discovery☆198Feb 19, 2025Updated last year
- useful functions for ggplot☆18Jul 16, 2025Updated 10 months ago
- microbiome R package☆316May 12, 2026Updated 2 weeks ago
- A comprehensive and customizable R package for microbiome analysis.☆24Aug 10, 2025Updated 9 months ago
- Scripts for stat and plot figures in rice microbiome paper☆20May 12, 2019Updated 7 years ago
- Microbial ecological network visualization clustering☆149Nov 20, 2025Updated 6 months ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated last month
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆244May 12, 2026Updated 2 weeks ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆40May 20, 2026Updated last week
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆388Nov 27, 2025Updated 6 months ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 9 months ago
- A comprehensive R package for deep mining microbiome☆194Apr 29, 2026Updated 3 weeks ago
- Interpretation and visualization of microbiome charts☆546Jul 22, 2025Updated 10 months ago
- Microbiome research☆21May 24, 2022Updated 4 years ago
- SourceTracker2☆89Jul 10, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 2 months ago
- ☆43Nov 20, 2017Updated 8 years ago
- ☆89May 22, 2024Updated 2 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 3 months ago
- A simple plot library☆53Jul 23, 2017Updated 8 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Interactively explore metagenomes and more from a web browser.☆501Dec 22, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆248Jan 18, 2024Updated 2 years ago
- Metagenome analysis pipeline☆102Jul 26, 2021Updated 4 years ago
- 🌈 Interactive analysis of metagenomics data☆451Sep 17, 2025Updated 8 months ago
- 微生信生物☆24Mar 17, 2025Updated last year
- bioBakery tools for meta'omic profiling☆315Jun 3, 2025Updated 11 months ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆84May 14, 2019Updated 7 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆126May 12, 2024Updated 2 years ago