convert various features into a GFF-like file for use in genome browsers
☆73Jun 17, 2026Updated 4 months ago
Alternatives and similar repositories for genomeGTFtools
Users that are interested in genomeGTFtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 7 years ago
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆15Oct 25, 2026Updated last week
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 8 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- source code for EVM☆130Sep 22, 2026Updated last month
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- ☆190May 22, 2025Updated last year
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆23Dec 6, 2018Updated 7 years ago
- Synteny Imager☆67Dec 18, 2025Updated 10 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆14Updated this week
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- Eukaryotic Genome Annotation Pipeline☆402Oct 25, 2026Updated last week
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Genome Scripts used in fungal comparative genomics☆66Sep 25, 2020Updated 6 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- ☆11Mar 25, 2019Updated 7 years ago
- Scripts to help transposable elements consensus sequences curation☆11Feb 16, 2018Updated 8 years ago
- several scripts for bioinformatics☆25Nov 27, 2025Updated 11 months ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Aug 10, 2026Updated 2 months ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated 9 months ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 7 months ago
- Population genetics analyses☆23Oct 10, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆39Apr 28, 2023Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 8 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Genome Annotation Pipeline☆47Aug 20, 2024Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆16Jan 29, 2024Updated 2 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- ☆271Jan 24, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for working with agp files☆20Jun 26, 2025Updated last year
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated 3 weeks ago
- ☆30Mar 4, 2022Updated 4 years ago
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 6 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆25Dec 1, 2022Updated 3 years ago