convert various features into a GFF-like file for use in genome browsers
☆73Jan 27, 2026Updated 2 months ago
Alternatives and similar repositories for genomeGTFtools
Users that are interested in genomeGTFtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- ☆187May 22, 2025Updated 10 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Jan 29, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- Version 5 of the CAFE phylogenetics software☆165Mar 16, 2026Updated 3 weeks ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- source code for EVM☆123Nov 29, 2024Updated last year
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 7 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last month
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Mar 25, 2019Updated 7 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆213Jan 17, 2024Updated 2 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- Eukaryotic Genome Annotation Pipeline☆385Updated this week
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- Synteny Imager☆65Dec 18, 2025Updated 3 months ago
- ☆16May 7, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- Segmental duplication detection tool☆16Feb 7, 2023Updated 3 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 2 years ago
- HyPhy standalone analyses☆53Jan 5, 2026Updated 3 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- Repository☆10Oct 23, 2024Updated last year
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Plant genome assembly and annotation pipeline using snakemake☆53May 14, 2025Updated 11 months ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- ☆76Jun 2, 2023Updated 2 years ago
- Genome Annotation Pipeline☆43Aug 20, 2024Updated last year