Alternatives and similar repositories for genomeGTFtools

Users that are interested in genomeGTFtools are comparing it to the libraries listed below

• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆78Updated 5 months ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆67Updated 2 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆76Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆62Updated 4 months ago
• slt666666 / NLRtracker
  NLR annotation tool
  ☆33Updated last year
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆57Updated 3 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last month
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆118Updated 10 months ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆38Updated 7 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆112Updated 3 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆40Updated 3 weeks ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆79Updated 2 weeks ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆83Updated this week
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆52Updated 2 months ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆31Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆101Updated last year
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 7 months ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆69Updated 2 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• rhysf / Synima
  Synteny Imager
  ☆64Updated 2 months ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated last month
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• CshlSiepelLab / phast
  PHAST
  ☆75Updated this week
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆36Updated 2 years ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated last year