convert various features into a GFF-like file for use in genome browsers
☆72Jan 27, 2026Updated last month
Alternatives and similar repositories for genomeGTFtools
Users that are interested in genomeGTFtools are comparing it to the libraries listed below
Sorting:
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- ☆186May 22, 2025Updated 9 months ago
- Synteny Imager☆65Dec 18, 2025Updated 2 months ago
- HyPhy standalone analyses☆53Jan 5, 2026Updated last month
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Jan 29, 2024Updated 2 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆161Feb 12, 2025Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆53Dec 10, 2025Updated 2 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- ☆73Jun 2, 2023Updated 2 years ago
- source code for EVM☆122Nov 29, 2024Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆11Mar 25, 2019Updated 6 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 2 months ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- ☆16May 7, 2023Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆382Feb 12, 2026Updated 2 weeks ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Nov 21, 2019Updated 6 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 3 months ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated last month
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆32Jan 3, 2025Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆53May 14, 2025Updated 9 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats