Alternatives and similar repositories for genomeGTFtools

Users that are interested in genomeGTFtools are comparing it to the libraries listed below

• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆79Updated 9 months ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆67Updated 2 years ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆68Updated last month
• ridgelab / JustOrthologs
  ☆34Updated 2 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 weeks ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• slt666666 / NLRtracker
  NLR annotation tool
  ☆35Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆121Updated 2 months ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆83Updated 3 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆85Updated last month
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆37Updated 8 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆35Updated last year
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆47Updated 3 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated 2 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆79Updated last year
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆90Updated this week
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆42Updated last month
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆53Updated last month
• CshlSiepelLab / phast
  PHAST
  ☆80Updated last week
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆54Updated 4 years ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆58Updated 3 years ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆32Updated last year
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆49Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated 2 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆122Updated last year
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆38Updated 2 years ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated 5 months ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆50Updated 5 years ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆73Updated 3 years ago