☆11Mar 25, 2019Updated 7 years ago
Alternatives and similar repositories for PlantPseudo
Users that are interested in PlantPseudo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- ☆11Mar 14, 2026Updated 6 months ago
- ☆43Jun 8, 2023Updated 3 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- R package for binmap☆12Aug 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- ☆30Mar 4, 2022Updated 4 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆113Nov 17, 2025Updated 10 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆123Jul 22, 2025Updated last year
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 8 months ago
- ☆22Sep 22, 2022Updated 4 years ago
- Multi-omics multi-layered network integration and interpretation☆15Oct 15, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- convert various features into a GFF-like file for use in genome browsers☆73Jun 17, 2026Updated 3 months ago
- ☆13Oct 30, 2019Updated 6 years ago
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- lncRNA-screen☆25Apr 19, 2017Updated 9 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Dec 24, 2020Updated 5 years ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆13Aug 24, 2026Updated last month
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆32Apr 17, 2025Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆127Apr 7, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Jan 19, 2022Updated 4 years ago
- ☆16Jul 7, 2025Updated last year
- A parallel wrapper for LTR_FINDER☆57Mar 8, 2026Updated 6 months ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Jul 15, 2026Updated 2 months ago
- Codes for the lettuce resequencing project in 2020☆32Jun 28, 2021Updated 5 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Analysis pipeline for Ribosome footprinting data☆26Jan 29, 2026Updated 7 months ago
- A pipeline to identify gene family using mutiple tools and scripts.☆12Aug 22, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- Shiny app for scaling eggnog☆14Aug 9, 2024Updated 2 years ago
- source code for HpcGridRunner☆17Aug 2, 2021Updated 5 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Jul 22, 2019Updated 7 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago