bjfupoplar / PlantPseudoLinks
☆12Updated 6 years ago
Alternatives and similar repositories for PlantPseudo
Users that are interested in PlantPseudo are comparing it to the libraries listed below
Sorting:
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- ☆21Updated 6 years ago
- iTAK☆43Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆35Updated 8 years ago
- ☆28Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- ☆28Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Structural variant caller☆55Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Structural variant merging tool☆55Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- ☆51Updated 6 years ago
- ☆21Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆37Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated last month