harrisonlab / popgen
Population genetics analyses
☆23Updated 5 years ago
Alternatives and similar repositories for popgen:
Users that are interested in popgen are comparing it to the libraries listed below
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- ☆24Updated 7 years ago
- ☆18Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- ☆16Updated 2 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆19Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- ☆24Updated last week
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Working on cotton resequencing☆11Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- ☆17Updated 9 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆28Updated 3 years ago
- General purpose population genetics software☆12Updated 5 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆31Updated 11 months ago
- ☆32Updated 4 years ago
- ☆21Updated 6 years ago
- ☆11Updated 2 years ago
- Presentations from the course☆36Updated last year
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last week
- A box of genomics tools☆21Updated 4 years ago