GaoLabXDU / HiSV
HiSV: a computational pipeline for structural variation detection from Hi-C data
☆15Updated 3 months ago
Alternatives and similar repositories for HiSV:
Users that are interested in HiSV are comparing it to the libraries listed below
- ☆16Updated 4 years ago
- Draw the Gene structure based on the GFF and gene's ID☆10Updated 4 years ago
- ☆36Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆17Updated 2 years ago
- ☆11Updated last year
- ☆37Updated last month
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated 11 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 11 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 4 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 8 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- ☆13Updated 7 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- ☆15Updated 2 years ago
- Arima Capture HiC pipeline (Arima-CHiC)☆11Updated 10 months ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Variant annotation and merging pipeline☆32Updated 2 months ago