Alternatives and similar repositories for HiSV

Users that are interested in HiSV are comparing it to the libraries listed below

• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆16Updated 7 months ago
• ArimaGenomics / Arima-SV-Pipeline
  ☆13Updated 2 weeks ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 6 months ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• xiaochuanle / Falign
  An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)
  ☆14Updated last year
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated last year
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• epi2me-labs / pore-c-py
  ☆16Updated last year
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆24Updated 2 years ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆22Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆42Updated 6 months ago
• LingbinNi / soybean_pan-3D_genome_analysis
  Pan-3D genome analysis of soybean Hi-C data
  ☆12Updated 2 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆19Updated 3 months ago
• ma-compbio / Phylo-HMRF
  ☆17Updated 5 years ago
• yiliao1022 / Pepper3Dgenome
  ☆16Updated 3 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• keleslab / FreeHiC
  FreeHi-C pipeline for high fidelity Hi-C data simulation.
  ☆12Updated 4 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 3 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆34Updated 6 months ago
• ConesaLab / SQANTI
  ☆14Updated 2 years ago
• tobiaszehnder / IPP
  Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence
  ☆23Updated last month
• epi2me-labs / wf-pore-c
  ☆49Updated 2 months ago
• xukaili / GFF2Gene_structure.pl
  Draw the Gene structure based on the GFF and gene's ID
  ☆10Updated 5 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆29Updated 11 months ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆45Updated 3 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆32Updated 3 weeks ago