GaoLabXDU / HiSVLinks
HiSV: a computational pipeline for structural variation detection from Hi-C data
☆18Updated 6 months ago
Alternatives and similar repositories for HiSV
Users that are interested in HiSV are comparing it to the libraries listed below
Sorting:
- ☆13Updated 2 months ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Updated last year
- ☆37Updated 6 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 6 months ago
- ☆17Updated 5 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆44Updated last year
- Variant annotation and merging pipeline☆41Updated 5 months ago
- ☆47Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Draw the Gene structure based on the GFF and gene's ID☆10Updated 5 years ago
- ☆14Updated 2 years ago
- ☆15Updated last year
- Improving gene isoform quantification with miniQuant☆31Updated 3 months ago
- ☆16Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 4 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- ☆32Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 10 months ago
- ☆33Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago