HiSV: a computational pipeline for structural variation detection from Hi-C data
☆18Jun 20, 2025Updated 9 months ago
Alternatives and similar repositories for HiSV
Users that are interested in HiSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 6 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated last year
- ☆13Sep 11, 2025Updated 6 months ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated 2 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated last month
- Pooled Sequencing Analysis for Sex Signal☆14Sep 14, 2021Updated 4 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆13Nov 4, 2022Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 3 months ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 4 years ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- ☆38Aug 14, 2019Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Aug 29, 2022Updated 3 years ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆17Mar 13, 2026Updated last week
- ☆32Sep 28, 2019Updated 6 years ago
- ☆13Jan 20, 2026Updated 2 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated last year
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- Architectural stripe detection from 3D genome conformation data☆18Sep 15, 2025Updated 6 months ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- Arima Capture HiC pipeline (Arima-CHiC)☆12May 16, 2024Updated last year
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 6, 2026Updated 2 weeks ago
- genomic alignment similarity search tool☆18May 15, 2025Updated 10 months ago
- ☆22Aug 11, 2020Updated 5 years ago
- ☆16Dec 25, 2024Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Jul 22, 2025Updated 8 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated last year
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 6 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 9 months ago
- convert PAF format to CHAIN format☆34May 14, 2025Updated 10 months ago
- gghic makes visualization of Hi-C/-like data easily in R☆26Jan 23, 2026Updated 2 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- base-level dotplots from PAF alignments☆32Sep 18, 2025Updated 6 months ago