Alternatives and similar repositories for HiSV:

Users that are interested in HiSV are comparing it to the libraries listed below

• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆42Updated 2 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• XiDsLab / TAGET
  ☆18Updated 2 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 4 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆37Updated 5 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 6 years ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆23Updated 2 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• keleslab / FreeHiC
  FreeHi-C pipeline for high fidelity Hi-C data simulation.
  ☆11Updated 3 years ago
• LappalainenLab / lorals
  ☆33Updated 2 years ago
• ArimaGenomics / CHiC
  Arima Capture HiC pipeline (Arima-CHiC)
  ☆11Updated 11 months ago
• epi2me-labs / wf-pore-c
  ☆39Updated 2 months ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆18Updated 11 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated 11 months ago
• ArimaGenomics / Arima-SV-Pipeline
  ☆12Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated 3 weeks ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆24Updated 9 months ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆14Updated 9 months ago
• zhongmicai / Hic_tools_collection
  ☆11Updated 5 years ago
• XiaoTaoWang / domaincaller
  A Python implementation of the original DI domain caller
  ☆12Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆33Updated 3 weeks ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated last year
• epi2me-labs / pore-c-py
  ☆14Updated 8 months ago
• ahansenlab / RCMC_analysis_code
  Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…
  ☆11Updated last year
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆38Updated 3 years ago