GaoLabXDU / HiSVLinks
HiSV: a computational pipeline for structural variation detection from Hi-C data
☆18Updated 5 months ago
Alternatives and similar repositories for HiSV
Users that are interested in HiSV are comparing it to the libraries listed below
Sorting:
- ☆37Updated 6 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 5 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- ☆13Updated 2 months ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 9 months ago
- ☆14Updated 2 years ago
- Draw the Gene structure based on the GFF and gene's ID☆10Updated 5 years ago
- ☆20Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- ☆38Updated 2 years ago
- Improving gene isoform quantification with miniQuant☆29Updated 2 months ago
- ☆34Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆17Updated 5 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 3 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- ☆47Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- Updated and optimized fork of BSMAP☆23Updated 4 years ago