A Tool for low Coverage HiFi Data Assembly
☆40Dec 27, 2025Updated 3 months ago
Alternatives and similar repositories for HiFiCCL
Users that are interested in HiFiCCL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Telomere compliment tools☆28Nov 17, 2025Updated 4 months ago
- ☆25Mar 27, 2026Updated 2 weeks ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 2 weeks ago
- Pangenome-based structural variation caller☆22Jan 20, 2026Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Mar 12, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Robust identification of orthologous Synteny with the Orthology Index☆41Mar 1, 2026Updated last month
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 4 months ago
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 3 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆26Jan 25, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Draw a dot plot from a paf alignment☆40Sep 18, 2025Updated 6 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Apr 2, 2026Updated last week
- ☆26Apr 22, 2025Updated 11 months ago
- This is the standalone version of the EviAnn pipeline☆143Apr 2, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).☆90Jan 25, 2026Updated 2 months ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 4 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- A KMER-based genome-wIde Assocation testing approach on polyploids☆44Feb 6, 2026Updated 2 months ago
- A program for assessing the T2T genome continuity☆94Feb 28, 2026Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 5 months ago
- 一些关于基因组及转录组的知识☆41Dec 29, 2025Updated 3 months ago
- Genome annotation pre-publication results☆26Mar 26, 2026Updated 2 weeks ago
- ☆14Oct 27, 2025Updated 5 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 10 months ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated last month
- Neural network classification of TE☆98Apr 3, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆35Mar 24, 2026Updated 2 weeks ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- ☆21Jan 29, 2024Updated 2 years ago