zhangyan32 / HiCPlus
☆31Updated 5 years ago
Alternatives and similar repositories for HiCPlus:
Users that are interested in HiCPlus are comparing it to the libraries listed below
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 3 months ago
- Code for reproducing the Sei manuscript results☆16Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- ☆16Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- ☆50Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- ☆25Updated 9 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated last year
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 9 months ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 6 months ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 4 years ago
- ☆11Updated 4 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 2 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 5 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆29Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆31Updated 2 years ago
- ☆18Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆18Updated last year
- TF analysis from epigenetic and Hi-C data☆17Updated last week
- ☆38Updated 5 years ago
- ☆10Updated 3 years ago