zhangyan32 / HiCPlusLinks
☆32Updated 6 years ago
Alternatives and similar repositories for HiCPlus
Users that are interested in HiCPlus are comparing it to the libraries listed below
Sorting:
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated 2 years ago
- ☆52Updated 2 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Updated 6 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 4 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 3 months ago
- ☆84Updated 5 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Updated last year
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 3 weeks ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- ☆16Updated 7 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆30Updated 10 months ago
- Signed LD profile regression code☆19Updated 6 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- nucleosome calling using ATAC-seq☆110Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- ☆38Updated 5 years ago
- Code for reproducing the Sei manuscript results☆17Updated 4 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆69Updated 2 months ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Updated 8 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago