☆39Aug 14, 2019Updated 6 years ago
Alternatives and similar repositories for hic_breakfinder
Users that are interested in hic_breakfinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 7 months ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- ☆13Jan 20, 2026Updated 2 months ago
- HiC for copy Number variation and Translocation detection☆42Aug 4, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Jun 30, 2024Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated 8 months ago
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 2 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- Convert HAL to VG☆24Aug 12, 2024Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- ☆13Sep 11, 2025Updated 7 months ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated 9 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Architectural stripe detection from 3D genome conformation data☆18Sep 15, 2025Updated 7 months ago
- ☆32Sep 28, 2019Updated 6 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆18Nov 9, 2020Updated 5 years ago
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- ☆13Jul 21, 2021Updated 4 years ago
- FAN-C: Framework for the ANalysis of C-like data☆120Mar 13, 2024Updated 2 years ago
- ☆17Mar 17, 2026Updated last month
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆93Aug 29, 2022Updated 3 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆76Oct 21, 2023Updated 2 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆479Aug 31, 2025Updated 7 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆434Mar 28, 2024Updated 2 years ago
- R interface to 'Gos'☆38Feb 23, 2023Updated 3 years ago
- Poisson-based algorithm for stable inference of DNA Structure☆39Updated this week
- Fast alignment and preprocessing of chromatin profiles☆217Mar 20, 2026Updated 3 weeks ago
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago