dixonlab / hic_breakfinderLinks
☆37Updated 5 years ago
Alternatives and similar repositories for hic_breakfinder
Users that are interested in hic_breakfinder are comparing it to the libraries listed below
Sorting:
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- 4C-seq processing pipeline☆23Updated 2 months ago
- ☆11Updated 5 years ago
- ☆26Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Genomic Association Tester☆31Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆22Updated last year
- ☆21Updated 4 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- ☆22Updated 5 months ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- ☆19Updated 10 months ago
- An Optimized Nested TAD caller for Hi-C data☆22Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Reconstruction of focal amplifications with long reads☆21Updated last week
- ☆23Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated 2 years ago
- ☆21Updated 3 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago