XiaoTaoWang / TADLib
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
☆40Updated 2 years ago
Alternatives and similar repositories for TADLib:
Users that are interested in TADLib are comparing it to the libraries listed below
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- ☆36Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- ☆21Updated last year
- ☆20Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 10 months ago
- 4C-seq processing pipeline☆23Updated 10 months ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- A Python implementation for BH-FDR and HiCCUPS☆44Updated 3 months ago
- ☆11Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- snakemake pipeline for Hi-C post-processing☆22Updated 7 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 10 months ago
- ☆16Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆14Updated 3 years ago
- ☆33Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 4 months ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago