paulsengroup / hictk
Blazing fast toolkit to work with .hic and .cool files
☆24Updated last week
Related projects ⓘ
Alternatives and complementary repositories for hictk
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆13Updated last week
- Red-C data processing☆13Updated last year
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆13Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated last year
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆19Updated 2 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆14Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆17Updated last year
- Cooler demo using a Jupyter notebook Binder☆15Updated 4 years ago
- Web-Application for the cross-visualization of HiC and ChIP-seq data.☆15Updated last week
- ☆17Updated 8 months ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆18Updated 11 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆23Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆18Updated 7 months ago
- Python bindings to UCSC BigWig and BigBed library☆31Updated 2 weeks ago
- Snakemake pipeline for microexon discovery and quantification☆19Updated last month
- ☆19Updated last year
- Chromatin domains bursting with flavor☆12Updated 4 years ago