Alternatives and similar repositories for enrichR:

Users that are interested in enrichR are comparing it to the libraries listed below

• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 3 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆114Updated 7 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆93Updated 6 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆107Updated 8 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆64Updated 8 months ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆80Updated last year
• rpolicastro / scProportionTest
  ☆61Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆122Updated 5 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆100Updated last week
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆72Updated 6 years ago
• liulab-dfci / RIMA_pipeline
  ☆79Updated last year
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated last week
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆91Updated 2 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆62Updated last year
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆67Updated last year
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆61Updated 3 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆59Updated 11 months ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆83Updated 5 months ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆75Updated last month
• elimereu / matchSCore2
  ☆54Updated 4 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆101Updated 2 years ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆106Updated 2 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆121Updated 3 weeks ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆57Updated last year
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago