An R interface to enrichR
☆97Feb 2, 2025Updated last year
Alternatives and similar repositories for enrichR
Users that are interested in enrichR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- All data and notebook for my 2020 scRNA-seq analysis workshop☆18Jul 27, 2020Updated 6 years ago
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- A hacky little interface to call the Enrichr functional enrichment tool from R.☆13Dec 13, 2018Updated 7 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 9 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 7 years ago
- R package for integrating and analyzing multiple single-cell datasets☆433Aug 18, 2026Updated last month
- Fast motif matching in R☆49Jan 24, 2024Updated 2 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆129Jan 30, 2023Updated 3 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆42Apr 15, 2021Updated 5 years ago
- Interpretation of cell states using reference single-cell maps☆326Dec 19, 2025Updated 9 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆159Aug 3, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Imputation method for scRNA-seq based on low-rank approximation☆81Dec 14, 2023Updated 2 years ago
- Interfaces for HDF5-based Single Cell File Formats☆177Nov 4, 2023Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 7 months ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆65Nov 26, 2020Updated 5 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆24Feb 4, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for EpiMap data browser☆14Jun 4, 2024Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 4 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆271Jan 10, 2026Updated 8 months ago
- Visualization of Functional Enrichment Result☆260Updated this week
- Methods for detecting doublets in single-cell sequencing data☆270Aug 31, 2026Updated 3 weeks ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated last year
- Easy single cell analysis platform for enrichment☆234Aug 9, 2026Updated last month
- Clone of the Bioconductor repository for the batchelor package.☆19Apr 9, 2026Updated 5 months ago
- Predicted cell-cell interactions of the aging mouse brain☆21Sep 24, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simplify functional enrichment results☆128Jan 30, 2026Updated 7 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- Cell type prioritization in single-cell data☆150Mar 26, 2026Updated 6 months ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 7 months ago
- Detecting sites of genomic enrichment☆204Sep 20, 2026Updated last week
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 6 months ago