lkuchenb / imseq
IMSEQ - IMmunogenetic SEQuence Analysis
☆15Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for imseq
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 weeks ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- WES HLA Typing based on multiple alternative tools☆15Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 8 years ago