egeulgen / pathfindRLinks
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
☆194Updated 2 weeks ago
Alternatives and similar repositories for pathfindR
Users that are interested in pathfindR are comparing it to the libraries listed below
Sorting:
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆172Updated this week
- Seurat meets tidyverse. The best of both worlds.☆159Updated this week
- Contribute Packages to Bioconductor☆142Updated 5 months ago
- Make Interactive Complex Heatmaps☆138Updated last year
- MSigDB gene sets for multiple organisms in a tidy data format☆82Updated 2 months ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆196Updated last year
- ☆334Updated 5 months ago
- Publication-quality sequence logos in R☆221Updated 11 months ago
- Pretty heatmaps☆265Updated 4 months ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆226Updated 2 months ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆154Updated last month
- Visualise Clusterings at Different Resolutions☆239Updated 3 months ago
- ☆26Updated 4 years ago
- Decorate a plot with associated information☆122Updated 3 weeks ago
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆94Updated last year
- R data package for annotating/converting Gene IDs☆166Updated 3 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆67Updated last month
- R package for "sum of single effects" regression.☆223Updated last week
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆109Updated last month
- Interactive Cytometry Data Analysis☆67Updated this week
- Genomic Data Retrieval with R☆223Updated 2 months ago
- A grammar of genomic data transformation☆148Updated 3 months ago
- A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)☆26Updated 2 months ago
- Visual self-service analytics platform for big omics data.☆125Updated this week
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆99Updated 4 months ago
- Stickers for some Bioconductor packages - feel free to contribute and/or modify.☆132Updated last week
- Publication-ready volcano plots with enhanced colouring and labeling☆439Updated last year
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆79Updated this week
- Visualization of Functional Enrichment Result☆248Updated 3 weeks ago