Alternatives and similar repositories for pathfindR

Users that are interested in pathfindR are comparing it to the libraries listed below

• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆171Updated last month
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆160Updated 9 months ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆163Updated 2 years ago
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆136Updated last month
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆190Updated last year
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆75Updated this week
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆135Updated last year
• omarwagih / ggseqlogo
  Publication-quality sequence logos in R
  ☆212Updated 7 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆62Updated 4 months ago
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆145Updated last month
• raivokolde / pheatmap
  Pretty heatmaps
  ☆253Updated last year
• XiaoLuo-boy / ggheatmap
  ggplot2 version of heatmap
  ☆87Updated 2 years ago
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆93Updated 10 months ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆103Updated 2 months ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆243Updated 2 weeks ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆248Updated 2 months ago
• iSEE / iSEE
  R/shiny interface for interactive visualization of data in SummarizedExperiment objects
  ☆226Updated 3 weeks ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆151Updated 7 months ago
• kevinblighe / EnhancedVolcano
  Publication-ready volcano plots with enhanced colouring and labeling
  ☆428Updated 11 months ago
• mhahsler / rBLAST
  Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
  ☆108Updated 4 months ago
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆108Updated 6 months ago
• lazappi / clustree
  Visualise Clusterings at Different Resolutions
  ☆227Updated last year
• bigomics / omicsplayground
  Visual self-service analytics platform for big omics data.
  ☆125Updated this week
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆164Updated 5 months ago
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆65Updated last month
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆397Updated 3 weeks ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• ropensci / biomartr
  Genomic Data Retrieval with R
  ☆221Updated 3 months ago
• yanlinlin82 / ggvenn
  Venn Diagram by ggplot2, with really easy-to-use API.
  ☆173Updated 3 months ago