GreenleafLab / motifmatchrLinks
Fast motif matching in R
☆46Updated last year
Alternatives and similar repositories for motifmatchr
Users that are interested in motifmatchr are comparing it to the libraries listed below
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆37Updated 10 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- scWGCNA☆61Updated 3 years ago
- ☆43Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 5 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- ☆43Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- ☆39Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆36Updated 3 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- ☆34Updated 6 years ago
- ☆59Updated last year
- ☆48Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- ☆29Updated 2 years ago