GreenleafLab / motifmatchrLinks
Fast motif matching in R
☆46Updated last year
Alternatives and similar repositories for motifmatchr
Users that are interested in motifmatchr are comparing it to the libraries listed below
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- ☆39Updated 4 years ago
- ☆37Updated 8 months ago
- ☆43Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- ☆59Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- ☆34Updated 6 years ago
- ☆29Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Identifying tumor cells at the single-cell level using machine learning☆49Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆51Updated last year