saezlab / progeny
R package for Pathway RespOnsive GENe activity inference
☆101Updated 2 years ago
Alternatives and similar repositories for progeny:
Users that are interested in progeny are comparing it to the libraries listed below
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago
- ☆59Updated 5 years ago
- ☆60Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆99Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- ☆61Updated 9 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 9 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated 2 months ago
- R package for semi-supervised single-cell data integration☆81Updated 3 weeks ago
- ☆61Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- ☆79Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆61Updated 2 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- ☆49Updated 6 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆80Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Mouse cell atlas☆60Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 8 months ago