saezlab / progeny
R package for Pathway RespOnsive GENe activity inference
☆100Updated 2 years ago
Alternatives and similar repositories for progeny:
Users that are interested in progeny are comparing it to the libraries listed below
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated last month
- ☆59Updated 5 years ago
- ☆61Updated last year
- ☆61Updated 8 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆96Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- ☆60Updated 4 years ago
- R package for semi-supervised single-cell data integration☆79Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- ☆78Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆78Updated last year
- Analysis of cell-cell communication at single-cell resolution☆100Updated 6 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated last month
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆61Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆71Updated 7 months ago
- ☆104Updated last week
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 7 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- Create stacked violin plot☆46Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 8 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated 2 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 3 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated last month