saezlab / progenyLinks
R package for Pathway RespOnsive GENe activity inference
☆107Updated 2 years ago
Alternatives and similar repositories for progeny
Users that are interested in progeny are comparing it to the libraries listed below
Sorting:
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last month
- ☆70Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆106Updated 2 years ago
- ☆62Updated 6 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆91Updated this week
- R package for semi-supervised single-cell data integration☆87Updated last week
- Single Cell Cluster Evaluation☆96Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆108Updated 3 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆108Updated 4 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 9 months ago
- ☆63Updated 4 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- ☆68Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- R package to access DoRothEA's regulons☆149Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- AUCell: score single cells with gene regulatory networks☆164Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆64Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year