ARCHS4 RNA-seq processing scripts and web server pages.
☆64Nov 26, 2020Updated 5 years ago
Alternatives and similar repositories for archs4
Users that are interested in archs4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago
- An r package that works as a wrapper to homologene☆49Nov 2, 2023Updated 2 years ago
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Feature selection for preserving biological trajectories in single-cell data☆21Jun 24, 2026Updated 3 months ago
- Deep learning-based prediction of regulatory genome sequences☆12Apr 20, 2020Updated 6 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 4 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated last month
- ☆12May 30, 2023Updated 3 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- Quality control on genetic variants from next-generation sequencing data using random forest☆19May 26, 2022Updated 4 years ago
- CiteFuse:☆29Feb 7, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆23Sep 7, 2019Updated 7 years ago
- ☆10Jul 22, 2020Updated 6 years ago
- IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)☆13Aug 26, 2026Updated last month
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆23Oct 9, 2020Updated 6 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆17May 16, 2023Updated 3 years ago
- Framework for running text mining tools on latest publications. Main page at:☆15Jul 13, 2022Updated 4 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 6 months ago
- Builds a PEP from SRA or GEO accessions☆55Oct 2, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- kallisto index tag extractor☆20Jul 6, 2019Updated 7 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 8 years ago
- Tools for manipulating annotated data matrices☆95Oct 13, 2021Updated 5 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆44Jul 20, 2025Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 11 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆23Apr 30, 2026Updated 5 months ago
- Personal diploid genome creation and coordinate conversion☆31Apr 1, 2025Updated last year
- liver cancer project☆12Sep 9, 2023Updated 3 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago
- A small R package to make sequencing read coverage plots in R.☆43Apr 3, 2026Updated 6 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 6 months ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago