YuLab-SMU / ChIPseeker

Related projects: ⓘ

• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆296Updated 8 months ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆226Updated 2 weeks ago
• hbctraining / DGE_workshop_salmon_online
  ☆169Updated 3 weeks ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆172Updated this week
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆252Updated last year
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆213Updated 3 weeks ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆198Updated 3 weeks ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆186Updated 6 months ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆232Updated 6 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆261Updated 3 years ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆196Updated 4 months ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆209Updated 11 months ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆351Updated last month
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆321Updated last month
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆274Updated last year
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆303Updated this week
• noriakis / ggkegg
  Analyzing and visualizing KEGG information using the grammar of graphics
  ☆210Updated 2 weeks ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆188Updated 2 months ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆132Updated 4 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆202Updated 3 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆280Updated last year
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆207Updated 6 months ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆266Updated 4 years ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆257Updated 11 months ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆204Updated last month
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆270Updated last year
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆224Updated 3 months ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆196Updated this week
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆183Updated 2 years ago
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆440Updated last week