Alternatives and similar repositories for ChIPseeker

Users that are interested in ChIPseeker are comparing it to the libraries listed below

• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆250Updated this week
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆348Updated 6 months ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆243Updated 3 months ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆268Updated 2 years ago
• hbctraining / Intro-to-DGE
  ☆211Updated 3 months ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆229Updated 6 months ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆197Updated 2 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆139Updated 5 years ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆218Updated 2 weeks ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆174Updated last year
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆481Updated 5 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆226Updated last year
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆271Updated last month
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆217Updated this week
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆329Updated 4 years ago
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆427Updated this week
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆212Updated 3 months ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆174Updated 4 years ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆198Updated last year
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆270Updated 10 months ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆287Updated last year
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆236Updated last week
• harvardinformatics / ATAC-seq
  ☆144Updated 6 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆198Updated last month
• Xinglab / rmats-turbo
  ☆282Updated last month
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆348Updated this week
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆311Updated 6 months ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆301Updated 2 years ago
• noriakis / ggkegg
  Analyzing and visualizing KEGG information using the grammar of graphics
  ☆235Updated last month