ChIP peak Annotation, Comparison and Visualization
☆250Nov 4, 2025Updated 3 months ago
Alternatives and similar repositories for ChIPseeker
Users that are interested in ChIPseeker are comparing it to the libraries listed below
Sorting:
- A universal enrichment tool for interpreting omics data☆1,170Feb 22, 2026Updated last week
- Visualization of Functional Enrichment Result☆256Updated this week
- MACS -- Model-based Analysis of ChIP-Seq☆767Updated this week
- ChIP-seq analysis notes from Ming Tang☆842Aug 5, 2024Updated last year
- Tools to process and analyze deep sequencing data.☆751Jul 23, 2025Updated 7 months ago
- HMMRATAC peak caller for ATAC-seq data☆97Nov 12, 2024Updated last year
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- Disease Ontology Semantic and Enrichment analysis☆125Feb 22, 2026Updated last week
- ☆13Nov 12, 2025Updated 3 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆460Dec 26, 2024Updated last year
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆199Jan 30, 2026Updated last month
- Visualization and annotation of phylogenetic trees☆918Jan 12, 2026Updated last month
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Feb 22, 2022Updated 4 years ago
- Fast alignment and preprocessing of chromatin profiles☆213Jan 17, 2026Updated last month
- ☆95Jul 6, 2025Updated 7 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆268May 5, 2023Updated 2 years ago
- ☆15Jul 25, 2025Updated 7 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆230Nov 21, 2025Updated 3 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆89Jan 23, 2025Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated last week
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 8 months ago
- Detecting sites of genomic enrichment☆199May 8, 2023Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Simplify functional enrichment results☆124Jan 30, 2026Updated last month
- Circular visualization in R☆1,008Nov 11, 2023Updated 2 years ago
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆33Dec 4, 2025Updated 2 months ago
- ☆440Jan 8, 2026Updated last month
- Fast Gene Set Enrichment Analysis☆433Jan 2, 2026Updated 2 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆302Mar 6, 2023Updated 2 years ago
- Transcript assembly and quantification for RNA-Seq☆489Dec 26, 2025Updated 2 months ago
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- Make Complex Heatmaps☆1,471Jan 30, 2026Updated last month
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- Visualize and annotate genomic coverage with ggplot2☆271Jan 24, 2025Updated last year
- TCGAbiolinks☆345Oct 7, 2025Updated 4 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆240Dec 2, 2025Updated 2 months ago
- Draw heatmap simply using a tidy data frame☆357Feb 7, 2026Updated 3 weeks ago