Alternatives and similar repositories for philharmonic

Users that are interested in philharmonic are comparing it to the libraries listed below

• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆32Updated last month
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated 2 weeks ago
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆20Updated last week
• goodarzilab / SwitchFinder
  ☆17Updated 10 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆31Updated 8 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆27Updated last year
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• Illumina / PromoterAI
  ☆25Updated this week
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated this week
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• clairemcwhite / vcmsa
  ☆30Updated last year
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆13Updated 2 weeks ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 11 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• ntranoslab / esm-variants
  ☆74Updated last year
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆42Updated 3 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 4 months ago
• JudeWells / chainsaw
  ☆39Updated 8 months ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆14Updated 3 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• statbiophys / soNNia
  ☆15Updated last week
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year