Decoding the functional networks of non-model organisms
☆12May 10, 2026Updated 2 months ago
Alternatives and similar repositories for philharmonic
Users that are interested in philharmonic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Dec 23, 2024Updated last year
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 2 years ago
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- The pytorch code of TDFold☆21Feb 25, 2026Updated 4 months ago
- Homomer symmetry prediction from protein sequence☆45Mar 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official implementation of "Learning the language of protein structures"☆42Mar 18, 2026Updated 4 months ago
- Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.☆152May 21, 2025Updated last year
- ☆12Nov 9, 2020Updated 5 years ago
- rebuilds and completes models of protein complexes using AlphaFold2☆19Jul 13, 2026Updated last week
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆119Feb 19, 2026Updated 5 months ago
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 2 years ago
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- Multiresolution Tensor Learning☆10Aug 18, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Conditionally Site-Independent Neural Evolution of Antibody Sequences (ICML '26)☆24May 9, 2026Updated 2 months ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. GOplot — Visualization of Functional Analysis Data. Homepage: https://gith…☆15Mar 30, 2016Updated 10 years ago
- Snakemake implementation of protein structure alignment software DaliLite v5☆15Mar 12, 2025Updated last year
- Tools to build coarse grained models and perform simulations with OpenMM☆24Dec 16, 2022Updated 3 years ago
- ☆11Nov 11, 2023Updated 2 years ago
- ☆15Apr 3, 2025Updated last year
- ☆23Dec 20, 2024Updated last year
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- ☆19Feb 3, 2023Updated 3 years ago
- Basic Local Alignment of Network Topology - fast, unbiased statistical graphlet sampling for any graphlet use☆28Updated this week
- An undergraduate class on introduction to computational biology by Professor Shao Li.☆14Mar 28, 2016Updated 10 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 3 years ago
- ☆18Mar 19, 2026Updated 4 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆28Sep 13, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 8 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Oct 6, 2025Updated 9 months ago
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆22Updated this week
- Merge X-ray diffraction data with Wilson's priors, variational inference, and metadata☆23May 18, 2026Updated 2 months ago
- ☆31Dec 12, 2024Updated last year
- modular Python packages for cryo-EM and cryo-ET☆21Jul 8, 2026Updated last week
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Jul 2, 2026Updated 2 weeks ago