Decoding the functional networks of non-model organisms
☆13Aug 12, 2026Updated 2 months ago
Alternatives and similar repositories for philharmonic
Users that are interested in philharmonic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Mar 27, 2026Updated 7 months ago
- Allosteric design of proteins using allosteric pathways, stability calculations, and normal mode analysis☆12Jan 11, 2026Updated 9 months ago
- ☆11Oct 7, 2025Updated last year
- Paste a protein sequence, get an a3m. Borrows AlphaFold DB's precomputed MSAs instead of running a search.☆11Aug 8, 2026Updated 2 months ago
- DNE for biological network representation learning - Science Advances☆14Dec 27, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Jul 31, 2026Updated 2 months ago
- ☆19Dec 23, 2024Updated last year
- ☆16Feb 13, 2026Updated 8 months ago
- Snakemake port of the original Galba pipeline☆13Updated this week
- The pytorch code of TDFold☆21Feb 25, 2026Updated 8 months ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 3 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆18May 4, 2026Updated 5 months ago
- ☆19Mar 19, 2026Updated 7 months ago
- ☆23Dec 20, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Official implementation of "Learning the language of protein structures"☆42Mar 18, 2026Updated 7 months ago
- Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.☆157May 21, 2025Updated last year
- Multiresolution Tensor Learning☆10Aug 18, 2020Updated 6 years ago
- Virus Protein Structural Analysis Toolkit☆15Sep 9, 2024Updated 2 years ago
- symdesign source☆11Jul 4, 2024Updated 2 years ago
- Self-supervised method for disentanglement, clustering and classification of objects in multidimensional image data☆17Oct 7, 2026Updated 3 weeks ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Jan 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Conditionally Site-Independent Neural Evolution of Antibody Sequences (ICML '26)☆25Aug 30, 2026Updated 2 months ago
- Protocol to redesign enzyme sequences for stability and expression followed in Krasnow et. al. 2025 (). Developed using ProteinMPNN (Daup…☆21May 11, 2026Updated 5 months ago
- kmer-based software for detecting bacterial strain genomes inside metagenomes☆12Dec 11, 2024Updated last year
- ML approach to discerning "best" Open Reading Frames (ORFs) from "noisy" transcriptomic data. Intended for identification of lineage-spec…☆10Aug 20, 2024Updated 2 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆66Jan 28, 2026Updated 9 months ago
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 3 years ago
- Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)☆13Apr 8, 2022Updated 4 years ago
- A pathway profiling tool designed for traversing metabolic pathway graphs, identifying most complete paths based on an evaluation set of …☆11Sep 10, 2026Updated last month
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Snakemake implementation of protein structure alignment software DaliLite v5☆16Mar 12, 2025Updated last year
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆20May 20, 2024Updated 2 years ago
- rebuilds and completes models of protein complexes using AlphaFold2☆20Sep 1, 2026Updated last month
- Metagenome read simulation of multiple synthetic communities☆10Jan 6, 2024Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- ☆93Sep 30, 2026Updated last month
- ☆11Nov 11, 2023Updated 2 years ago