sansomlab / tenxLinks
Pipelines for the analysis of 10x single-cell RNA-sequencing data
☆58Updated 2 years ago
Alternatives and similar repositories for tenx
Users that are interested in tenx are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last week
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- ☆70Updated 2 years ago
- Mouse cell atlas☆62Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆77Updated 2 months ago
- ☆59Updated 11 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆63Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 7 months ago
- ☆70Updated last year
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆41Updated 5 years ago
- Tools for single-cell data processing☆126Updated last year
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆55Updated 4 years ago