sansomlab / tenxLinks
Pipelines for the analysis of 10x single-cell RNA-sequencing data
☆58Updated 2 years ago
Alternatives and similar repositories for tenx
Users that are interested in tenx are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 5 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Mouse cell atlas☆61Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆63Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- ☆74Updated 2 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 6 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆104Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆59Updated last year
- ☆55Updated 4 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆43Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆71Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- scRNA-seq cell type identification☆43Updated 6 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago