sansomlab / tenxLinks
Pipelines for the analysis of 10x single-cell RNA-sequencing data
☆58Updated 2 years ago
Alternatives and similar repositories for tenx
Users that are interested in tenx are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆99Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- ☆74Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 8 months ago
- ☆55Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- ☆71Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- ☆63Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 6 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated this week
- ☆69Updated 7 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- ☆59Updated last year
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago