sansomlab / tenx
Pipelines for the analysis of 10x single-cell RNA-sequencing data
☆57Updated last year
Alternatives and similar repositories for tenx:
Users that are interested in tenx are comparing it to the libraries listed below
- ☆53Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- ☆61Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆66Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- ☆60Updated 4 years ago
- ☆56Updated 4 months ago
- Mouse cell atlas☆60Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated last month
- A tool for unsupervised projection of single cell RNA-seq data☆92Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆79Updated 5 months ago
- ☆76Updated last year
- ☆59Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- ☆47Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆70Updated 3 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- Single Cell Analysis of Five'Ends☆47Updated 9 months ago