Mapping-Assisted Targeted-Assembly for Metagenomics
☆26Mar 28, 2025Updated 11 months ago
Alternatives and similar repositories for matam
Users that are interested in matam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- ☆20Apr 24, 2025Updated 11 months ago
- ☆19Jan 16, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- Clustering cONtigs with COverage and ComposiTion☆137Mar 6, 2020Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Toolbox for comparative genomics of MAGs☆88Mar 19, 2026Updated last week
- DDBJ Fast Annotation and Submission Tool☆84Feb 4, 2026Updated last month
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 7 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated 9 months ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- UFCG: Universal Fungal Core Genes☆36Jul 29, 2025Updated 7 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- Large scale Blast Score Ratio (BSR) analysis☆37Nov 18, 2025Updated 4 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- Fast metagenome analysis toolkit☆27Sep 3, 2024Updated last year
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆15Jun 21, 2024Updated last year
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- ☆15Apr 19, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆16Sep 30, 2024Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆699Oct 28, 2025Updated 4 months ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆325Mar 18, 2026Updated last week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆58Nov 21, 2024Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 9 months ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- ☆22Apr 3, 2023Updated 2 years ago
- ☆10May 14, 2025Updated 10 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.☆35Jul 30, 2019Updated 6 years ago