bonsai-team / matamLinks
Mapping-Assisted Targeted-Assembly for Metagenomics
☆21Updated 2 months ago
Alternatives and similar repositories for matam
Users that are interested in matam are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated 2 months ago
- ☆20Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- ☆25Updated 6 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Recombination-free trees☆58Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- Strain Resolution ON Graphs☆48Updated last year
- Gene-flank analysis tool☆27Updated 6 months ago
- Discover and annotate the virome☆43Updated 2 months ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆10Updated 6 months ago