Mapping-Assisted Targeted-Assembly for Metagenomics
☆27Mar 28, 2025Updated last year
Alternatives and similar repositories for matam
Users that are interested in matam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 10 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- ☆20Apr 24, 2025Updated last year
- ☆19Jan 16, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated last month
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated last year
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 8 years ago
- Large scale Blast Score Ratio (BSR) analysis☆36Nov 18, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DDBJ Fast Annotation and Submission Tool☆87Jul 22, 2026Updated 2 months ago
- CAMITAX: Taxon labels for microbial genomes☆33Dec 14, 2023Updated 2 years ago
- UFCG: Universal Fungal Core Genes☆37Jul 29, 2025Updated last year
- Fast metagenome analysis toolkit☆29Sep 3, 2024Updated 2 years ago
- Phage-Host Interaction Search Tool☆33Sep 10, 2026Updated 2 weeks ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆17Jun 21, 2024Updated 2 years ago
- A metagenome assembler for the linked-reads with high-barcode specificity☆10Feb 27, 2026Updated 6 months ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 11 years ago
- ☆15Apr 19, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- The binning tool with dynamic contrastive learning and deep language model☆25Aug 14, 2026Updated last month
- Ultra-fast and memory-efficient (meta-)genome assembler☆727Oct 28, 2025Updated 10 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- A pipeline to identify BLAST hits and perform phylogenetic analysis across multiple queries and local genome databases☆28Sep 11, 2026Updated last week
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- ☆23Apr 3, 2023Updated 3 years ago
- An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.☆36Jul 30, 2019Updated 7 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated 3 weeks ago
- ☆33Jul 16, 2023Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆49Apr 8, 2026Updated 5 months ago