bonsai-team / matamLinks
Mapping-Assisted Targeted-Assembly for Metagenomics
☆21Updated 2 months ago
Alternatives and similar repositories for matam
Users that are interested in matam are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- ☆24Updated 6 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 3 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- ☆20Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Estimate metagenomic coverage and sequence diversity☆53Updated 10 months ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Discover and annotate the virome☆42Updated last month
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Recombination-free trees☆58Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated 2 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- ☆36Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- ☆50Updated last year