mmpust / raspirLinks
Raspir, the rare species identifier
☆11Updated last year
Alternatives and similar repositories for raspir
Users that are interested in raspir are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Updated 9 months ago
- Neptune: Genomic Signature Discovery☆20Updated 10 months ago
- Dadaist2 🟨 Highway to R☆13Updated 6 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆19Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Updated 7 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 weeks ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆18Updated 11 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆36Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 6 months ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated last week
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated last month
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month