AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155
☆22Apr 12, 2023Updated 2 years ago
Alternatives and similar repositories for aim
Users that are interested in aim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated last year
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆31Dec 19, 2022Updated 3 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆18Jun 3, 2019Updated 6 years ago
- SimplePIM is the first high-level programming framework for real-world processing-in-memory (PIM) architectures. Described in the PACT 20…☆32Oct 23, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PyGim is the first runtime framework to efficiently execute Graph Neural Networks (GNNs) on real Processing-in-Memory systems. It provide…☆37Apr 23, 2025Updated 11 months ago
- A survey of manufacturer-provided DRAM operating parameters and timings as specified by DRAM chip datasheets from between 1970 and 2021. …☆11May 4, 2022Updated 3 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- Performance Evaluation of AF_XDP Communication Patterns. Artifacts for "Are Kernel Drivers Ready For Accelerated Packet Processing Using …☆11Jun 11, 2024Updated last year
- Chai☆47Nov 14, 2025Updated 4 months ago
- Source code for the architectural and circuit-level simulators used for modeling the CROW (Copy-ROW DRAM) mechanism proposed in our ISCA …☆15Aug 2, 2019Updated 6 years ago
- Circuit-level model for the Capacity-Latency Reconfigurable DRAM (CLR-DRAM) architecture. This repository contains the SPICE models of th…☆14Sep 24, 2020Updated 5 years ago
- A source-to-source compiler for optimizing CUDA dynamic parallelism by aggregating launches☆15Jun 21, 2019Updated 6 years ago
- PIM-ML is a benchmark for training machine learning algorithms on the UPMEM architecture, which is the first publicly-available real-worl…☆25Jan 7, 2025Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Provides a base when implementing the repository pattern with EF6.☆11Aug 31, 2020Updated 5 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Nov 3, 2022Updated 3 years ago
- In-Browser Prayer Times and Notifications for Google Chrome and Microsoft Edge Chromium☆20Feb 7, 2026Updated 2 months ago
- A tracing tool to analyze the I/O behavior of a program.☆12Sep 25, 2019Updated 6 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 2 years ago
- TransPimLib is a library for transcendental (and other hard-to-calculate) functions in general-purpose PIM systems, TransPimLib provides …☆15Apr 21, 2023Updated 2 years ago
- PrIM (Processing-In-Memory benchmarks) is the first benchmark suite for a real-world processing-in-memory (PIM) architecture. PrIM is dev…☆170Apr 29, 2024Updated last year
- A CV template built as a web app. Prints perfectly on A4 papers.☆13Nov 27, 2021Updated 4 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Sync your Anilist anime list to MyAnimeList.☆11Dec 8, 2018Updated 7 years ago
- pLUTo is a DRAM-based Processing-using-Memory architecture that leverages the high density of DRAM to enable the massively parallel stori…☆18Jan 12, 2023Updated 3 years ago
- ☆14May 12, 2023Updated 2 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆41Apr 30, 2025Updated 11 months ago
- Provides attribute based configuration of dependency injection services.☆12Nov 8, 2022Updated 3 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆21Mar 5, 2019Updated 7 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Mar 16, 2026Updated 3 weeks ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆56Mar 31, 2023Updated 3 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated last month
- A map that will hold the routes and stops of all the buses and vans in Lebanon. This data is meant to be public and available in order to…☆12Feb 15, 2019Updated 7 years ago
- Infiniband RDMA Examples using libibverbs and librdmacm for learning purposes☆12Sep 24, 2021Updated 4 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Sep 12, 2023Updated 2 years ago