A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets
☆22Feb 16, 2026Updated 5 months ago
Alternatives and similar repositories for methylasso
Users that are interested in methylasso are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Kmer Analysis of Pileups for Genotyping☆40Updated this week
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Blazingly fast, streaming duplicate detection for NGS data☆17Updated this week
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jun 25, 2026Updated 3 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Updated this week
- bioinformatics toolkit in rust☆107Updated this week
- Efficient querying of biological databases☆44Oct 27, 2025Updated 8 months ago
- ☆17Updated this week
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆42Jul 1, 2026Updated 3 weeks ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 5 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Jun 17, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ☆44Dec 29, 2025Updated 6 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆14Apr 12, 2026Updated 3 months ago
- ☆22Jan 3, 2025Updated last year
- NEFF Calculator and MSA File Converter☆15May 6, 2026Updated 2 months ago
- ☆18May 8, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Complex structural variant visualization for HiFi sequencing data☆49Oct 24, 2025Updated 8 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 7 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 2 weeks ago
- ☆27Nov 14, 2025Updated 8 months ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆21Jul 1, 2026Updated 3 weeks ago
- ☆13Aug 6, 2025Updated 11 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- Tutorial for generating and evaluating latent-space representations of vocalizations using UMAP☆15May 1, 2022Updated 4 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆32Jun 18, 2026Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20May 19, 2026Updated 2 months ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆30Mar 1, 2026Updated 4 months ago
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆45Mar 12, 2025Updated last year
- BISulfite-seq CUI Toolkit☆26Jun 24, 2026Updated 3 weeks ago