A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets
☆21Feb 16, 2026Updated 3 months ago
Alternatives and similar repositories for methylasso
Users that are interested in methylasso are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Kmer Analysis of Pileups for Genotyping☆39Mar 6, 2026Updated 2 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- A rust implementation of STAR☆44Updated this week
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆31Nov 25, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated last month
- bioinformatics toolkit in rust☆107May 14, 2026Updated last week
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆18Updated this week
- ☆17May 14, 2026Updated last week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Apr 12, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- ☆17May 4, 2026Updated 2 weeks ago
- ☆22Jan 3, 2025Updated last year
- ☆32Feb 14, 2026Updated 3 months ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 4 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 2 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 5 months ago
- ☆29Mar 1, 2026Updated 2 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tutorial for generating and evaluating latent-space representations of vocalizations using UMAP☆15May 1, 2022Updated 4 years ago
- ☆12Aug 6, 2025Updated 9 months ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 4 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A high-performance BigWig and BigBed library in Rust☆115May 6, 2026Updated 2 weeks ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- Functions to compare a SV call sets against a truth set.☆31Jun 18, 2025Updated 11 months ago
- Complex structural variant visualization for HiFi sequencing data☆48Oct 24, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆45Mar 12, 2025Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆190Apr 19, 2026Updated last month
- hazard and excess hazard modelling with multidimensional penalized splines☆12Mar 25, 2026Updated last month
- NEFF Calculator and MSA File Converter☆14May 6, 2026Updated 2 weeks ago
- Scoring GT/AG sites for improving spliced alignment☆52Nov 10, 2025Updated 6 months ago
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated last month
- A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)☆27Jul 28, 2025Updated 9 months ago