COMBINE-lab / alevin-fryLinks
π π¬π¦ alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
β191Updated last month
Alternatives and similar repositories for alevin-fry
Users that are interested in alevin-fry are comparing it to the libraries listed below
Sorting:
- Single-Cell Genotyping Toolβ210Updated last year
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelinesβ65Updated 5 months ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workfβ¦β164Updated 4 months ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processingβ171Updated 3 months ago
- recipes that save timeβ142Updated 3 weeks ago
- Clustering scRNAseq by genotypesβ189Updated 10 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.β106Updated 3 months ago
- Differential expression analysis for single-cell RNA-seq data.β204Updated 6 months ago
- Efficient genotyping bi-allelic SNPs on single cellsβ150Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq dataβ119Updated 3 years ago
- machine-readable file format for genomic library sequence and structureβ121Updated last week
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.β112Updated 10 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)β236Updated 2 months ago
- Convert between AnnData and SingleCellExperimentβ139Updated last week
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq dataβ130Updated last year
- β79Updated last year
- A scanpy extension to analyse single-cell TCR and BCR data.β237Updated this week
- muon is a multimodal omics Python frameworkβ247Updated last month
- Detect doublets in single-cell RNA-seq dataβ155Updated 4 years ago
- Fast alignment and preprocessing of chromatin profilesβ203Updated 2 weeks ago
- Haplotype-aware CNV analysis from single-cell RNA-seqβ190Updated 2 months ago
- Java tools for analyzing Drop-seq dataβ130Updated last week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIsβ284Updated last year
- Single-cell epigenomics analysis toolsβ285Updated 2 weeks ago
- Single Cell Analysis Pipelinesβ106Updated last week
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed inβ¦β120Updated last year
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)β47Updated 3 weeks ago
- SUPPA: Fast quantification of splicing and differential splicingβ280Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signalβ225Updated last week
- Tools for single-cell data processingβ126Updated last year