Alternatives and similar repositories for MultiSKAT

Users that are interested in MultiSKAT are comparing it to the libraries listed below

• timflutre / eqtlbma
  Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.
  ☆23Updated 7 years ago
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆72Updated last year
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated 2 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆31Updated last year
• mskcc / facets-suite
  Utility functions for FACETS
  ☆39Updated 2 months ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆12Updated 9 months ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 5 years ago
• mskilab-org / fishHook
  R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…
  ☆31Updated 2 months ago
• UMCUGenetics / CHORD
  An R package for predicting HR deficiency from mutation contexts
  ☆30Updated 10 months ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆69Updated 7 years ago
• fhormoz / caviar
  ☆63Updated 4 years ago
• morrislab / TrackSig
  A framework to infer mutational signatures in cancer over time
  ☆56Updated 6 years ago
• eyzhao / hrdetect-pipeline
  ☆36Updated 6 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• mcmero / SVclone
  A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
  ☆42Updated 4 months ago
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆30Updated 7 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 6 months ago
• single-cell-genetics / limix_qtl
  ☆20Updated 5 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 3 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated 3 weeks ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 3 years ago
• MRCIEU / PhenoSpD
  ☆18Updated 8 years ago
• zhouhufeng / FAVORannotator
  ☆22Updated 2 years ago
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆52Updated 6 years ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆40Updated 4 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆20Updated 2 years ago